Non-Coding RNA Search

Ss1.1-ruio11_m16.5

Sequence:


               
               TTGTTAATGGCTTGTCCTCACCAACCATGAGCCAGACATTTGGCTTTTTTGGAATTTCTG
GGAGTGACAGTATGAAAAAGTGATTATTCCCTTAATGTTTTGGCTTTGTAATATCTAAGC
CTTTTTGTCTTTCCTATACAAGAAAATAGATTATATTGTAGATTACAGACCTCCTTTTAA
TTTTGAAGAGTTTTAGAAAAGCTCACATTATTTAGAGCAACAACTTCTGTATTTGGGAAT
TTAAAATTCTTCATTTAAAAAATACATGAAATTTAATATCTTGAAGTAGTTTAAGATTCT
ATCTTATCTGTATTTGTAAAAAATTAACTTTGCAAAAGGAACTCAAAAGCCTTTATTATT
CCCAGTTTCTTTAAAACTGACTTGGTCTGGTGTCATCACTAAATCTAAATAGCTGTCCAC
TATGAGTGCTTTGCCTATTCTCTAGTCCTCGGTGGTTGAGAAACTAAAAGAACTTAGAAT
CCTGCACACTGACATACAGAATGCTGTAAATTAAAATAGCATTTAACTCTTATATCTCTG
TTCTTCAGTTACACCAACATTCTCACATGTTGGCCAAGATCACTAATGATTCATGCCTAC
TTGATTTTTCTAGAATCCTATAGATGTTTATGAGGCTATTTCTTCATTTTGGGGAAATAC
CTAATTTTGAGGCATTCACTTTTGTAAACCGCAAAAGTGCCTTACAGTCATGTGTACTTC
ACTAATATTTTAAATTTTTGCCCAGTGCCATACTGTATACTATGTATTCTGTGTGTGTGT
GTCTGTGTGTGTGTGTGTGTGTATGTGGTATATGTTGAAATGATTCTTGAAATTTAGAAT
GTGGGAAAATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTAATGGCTTGTCCTCACCAACCATGAGCCAGACATTTGGCTTTTTTGGAATTTCTG
GGAGTGACAGTATGAAAAAGTGATTATTCCCTTAATGTTTTGGCTTTGTAATATCTAAGC
CTTTTTGTCTTTCCTATACAAGAAAATAGATTATATTGTAGATTACAGACCTCCTTTTAA
TTTTGAAGAGTTTTAGAAAAGCTCACATTATTTAGAGCAACAACTTCTGTATTTGGGAAT
TTAAAATTCTTCATTTAAAAAATACATGAAATTTAATATCTTGAAGTAGTTTAAGATTCT
ATCTTATCTGTATTTGTAAAAAATTAACTTTGCAAAAGGAACTCAAAAGCCTTTATTATT
CCCAGTTTCTTTAAAACTGACTTGGTCTGGTGTCATCACTAAATCTAAATAGCTGTCCAC
TATGAGTGCTTTGCCTATTCTCTAGTCCTCGGTGGTTGAGAAACTAAAAGAACTTAGAAT
CCTGCACACTGACATACAGAATGCTGTAAATTAAAATAGCATTTAACTCTTATATCTCTG
TTCTTCAGTTACACCAACATTCTCACATGTTGGCCAAGATCACTAATGATTCATGCCTAC
TTGATTTTTCTAGAATCCTATAGATGTTTATGAGGCTATTTCTTCATTTTGGGGAAATAC
CTAATTTTGAGGCATTCACTTTTGTAAACCGCAAAAGTGCCTTACAGTCATGTGTACTTC
ACTAATATTTTAAATTTTTGCCCAGTGCCATACTGTATACTATGTATTCTGTGTGTGTGT
GTCTGTGTGTGTGTGTGTGTGTATGTGGTATATGTTGAAATGATTCTTGAAATTTAGAAT
GTGGGAAAATAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               580-739, - strand, RNAz p=0.988131

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               580-739, - strand, RNAz p=0.988131

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               35-787, gnl|bosTau2|chr10 (28674227-28673480)
               

               
               35-787, gnl|Hg17|chr14 (49782256-49781493)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-787, gnl|bosTau2|chr10 (28674227-28673480)
               

               
               35-787, gnl|Hg17|chr14 (49782256-49781493)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.259471)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               pgl (0.118483)

	35-787, gnl\|bosTau2\|chr10 (28674227-28673480)
	35-787, gnl\|Hg17\|chr14 (49782256-49781493)