Non-Coding RNA Search

Ss1.1-ruio11_m3.5

Sequence:


               
               CCAAAACCCTGGTACTTAACTTCAGAGCAGAGGGTGAACAAAACTCATCTAATCCCAGAA
GTGGGAGGATCACTCCTAATATTTTGAAAACTGGACTTTCTGTAGAAAATATTGGCCTTG
GCTTGGGAAGCCTAGAGGGAACACACCAATCCCTTGACCTGTTAGCAGGAGGAATGATGT
CTGAGGAAATGGAAGAAACTTCTCAGTTAGAGAAACAAGATTCACTCAGATTGGAATCAG
AAACAATTAATCCTTTAGGCCTTGGGCAATCTCCTTGCCTTCCAGACCTTGTTGACTTCG
TCACTCGGACATCTGGAGTTCAAAAAGAGAAGATATGTTCTCCTCTCTCTGAGCCGGGTG
GCCTTCCTGAGTGTAGTTCCCTGGAGATGGGACCACTACAGCTAGAAATACCGAATCCAT
CCGTCACAGAGATAGCACTTCCTCAAGTAGATGAGTACAATGACAACCCCTTGAATATGG
TAAAATCTATGGCTTCAGGGTCCCAAACAAGGGAGCAGGTAGTTGGAGGCAGTATGGTCC
CTCAGGAAATAGCTGCACAAGAAACTGCTGTTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAACCCTGGTACTTAACTTCAGAGCAGAGGGTGAACAAAACTCATCTAATCCCAGAA
GTGGGAGGATCACTCCTAATATTTTGAAAACTGGACTTTCTGTAGAAAATATTGGCCTTG
GCTTGGGAAGCCTAGAGGGAACACACCAATCCCTTGACCTGTTAGCAGGAGGAATGATGT
CTGAGGAAATGGAAGAAACTTCTCAGTTAGAGAAACAAGATTCACTCAGATTGGAATCAG
AAACAATTAATCCTTTAGGCCTTGGGCAATCTCCTTGCCTTCCAGACCTTGTTGACTTCG
TCACTCGGACATCTGGAGTTCAAAAAGAGAAGATATGTTCTCCTCTCTCTGAGCCGGGTG
GCCTTCCTGAGTGTAGTTCCCTGGAGATGGGACCACTACAGCTAGAAATACCGAATCCAT
CCGTCACAGAGATAGCACTTCCTCAAGTAGATGAGTACAATGACAACCCCTTGAATATGG
TAAAATCTATGGCTTCAGGGTCCCAAACAAGGGAGCAGGTAGTTGGAGGCAGTATGGTCC
CTCAGGAAATAGCTGCACAAGAAACTGCTGTTGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3970870|dbj|BAA34799.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3970870|dbj|BAA34799.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               157-436, - strand, RNAz p=0.840441
               

               
               431-547, + strand, RNAz p=0.775291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-436, - strand, RNAz p=0.840441
               

               
               431-547, + strand, RNAz p=0.775291

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-576, gnl|bosTau2|chr23 (17197242-17196667)
               

               
               1-576, gnl|canFam2|chr12 (14817064-14817545)
               

               
               1-576, gnl|dasNov1|scaffold_24814 (52312-52795)
               

               
               1-576, gnl|echTel1|scaffold_314644 (82861-82421)
               

               
               1-576, gnl|hg17|chr6 (43412870-43413348)
               

               
               1-576, gnl|Hg17|chr6 (43413487-43412912)
               

               
               1-576, gnl|loxAfr1|scaffold_40512 (1154-723)
               

               
               1-576, gnl|mm7|chr17 (44541440-44540971)
               

               
               1-576, gnl|Mm7|chr17 (44540833-44541402)
               

               
               1-576, gnl|monDom2|scaffold_0 (198196441-198195963)
               

               
               1-576, gnl|oryCun1|scaffold_208878 (37573-37095)
               

               
               1-576, gnl|panTro1|chr5 (44011867-44012345)
               

               
               1-576, gnl|rheMac2|chr4 (43233298-43233776)
               

               
               1-576, gnl|rn3|chr9 (9955800-9956269)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr23 (17197242-17196667)
               

               
               1-576, gnl|canFam2|chr12 (14817064-14817545)
               

               
               1-576, gnl|dasNov1|scaffold_24814 (52312-52795)
               

               
               1-576, gnl|echTel1|scaffold_314644 (82861-82421)
               

               
               1-576, gnl|hg17|chr6 (43412870-43413348)
               

               
               1-576, gnl|Hg17|chr6 (43413487-43412912)
               

               
               1-576, gnl|loxAfr1|scaffold_40512 (1154-723)
               

               
               1-576, gnl|mm7|chr17 (44541440-44540971)
               

               
               1-576, gnl|Mm7|chr17 (44540833-44541402)
               

               
               1-576, gnl|monDom2|scaffold_0 (198196441-198195963)
               

               
               1-576, gnl|oryCun1|scaffold_208878 (37573-37095)
               

               
               1-576, gnl|panTro1|chr5 (44011867-44012345)
               

               
               1-576, gnl|rheMac2|chr4 (43233298-43233776)
               

               
               1-576, gnl|rn3|chr9 (9955800-9956269)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               kid (0.129735)

	157-436, - strand, RNAz p=0.840441
	431-547, + strand, RNAz p=0.775291

	1-576, gnl\|bosTau2\|chr23 (17197242-17196667)
	1-576, gnl\|canFam2\|chr12 (14817064-14817545)
	1-576, gnl\|dasNov1\|scaffold_24814 (52312-52795)
	1-576, gnl\|echTel1\|scaffold_314644 (82861-82421)
	1-576, gnl\|hg17\|chr6 (43412870-43413348)
	1-576, gnl\|Hg17\|chr6 (43413487-43412912)
	1-576, gnl\|loxAfr1\|scaffold_40512 (1154-723)
	1-576, gnl\|mm7\|chr17 (44541440-44540971)
	1-576, gnl\|Mm7\|chr17 (44540833-44541402)
	1-576, gnl\|monDom2\|scaffold_0 (198196441-198195963)
	1-576, gnl\|oryCun1\|scaffold_208878 (37573-37095)
	1-576, gnl\|panTro1\|chr5 (44011867-44012345)
	1-576, gnl\|rheMac2\|chr4 (43233298-43233776)
	1-576, gnl\|rn3\|chr9 (9955800-9956269)