Non-Coding RNA Search

Ss1.1-ruio13_n18.5

Sequence:


               
               AAAGAAAAAAAAAGAAAAAAAGAAAAAGAAATATGGAAAAGAACTCATGATAAGGAACCC
CACAATAATGTGAATTCAGATATAATGCAATTGGCATTTGGCTCCCCAGCCTCTCACCAC
CTCCAGTTGGCTAACTGCAGACTTGCTCTGGTTATTTCATTAAATCTTGTAATAATGCAA
CCTCACATTTTATGTGATTGAATTTATTGGACCTTACAAGTTGTATGGCATAATGTTACT
GTACTCTCAGTAAAGATTATAATAGTGTAATAAGCAAAAATATTAGTAATACAATTTCAG
TATTACTGCGTTAGTTCAAGTTAATTGTGTAGAATGTTTCATTGTATAGAATGTTAATGA
GCATCTTGATAACTGGAAAACATTTGCAGCACCACCTGCCATGTTATACACATTCTTTAT
AAAGCACTTTATGCTTTAGGAGAATGACTAATTATCTGTGAATTATATTTGTTACTGTAC
ATAAAGAAAAATATATCTTTATTCGAAAACTGTTATAATGGATAGTGCAAGATATTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAAAAAAAAGAAAAAAAGAAAAAGAAATATGGAAAAGAACTCATGATAAGGAACCC
CACAATAATGTGAATTCAGATATAATGCAATTGGCATTTGGCTCCCCAGCCTCTCACCAC
CTCCAGTTGGCTAACTGCAGACTTGCTCTGGTTATTTCATTAAATCTTGTAATAATGCAA
CCTCACATTTTATGTGATTGAATTTATTGGACCTTACAAGTTGTATGGCATAATGTTACT
GTACTCTCAGTAAAGATTATAATAGTGTAATAAGCAAAAATATTAGTAATACAATTTCAG
TATTACTGCGTTAGTTCAAGTTAATTGTGTAGAATGTTTCATTGTATAGAATGTTAATGA
GCATCTTGATAACTGGAAAACATTTGCAGCACCACCTGCCATGTTATACACATTCTTTAT
AAAGCACTTTATGCTTTAGGAGAATGACTAATTATCTGTGAATTATATTTGTTACTGTAC
ATAAAGAAAAATATATCTTTATTCGAAAACTGTTATAATGGATAGTGCAAGATATTTAGA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               30-540, gnl|bosTau2|chr28 (2145287-2144776)
               

               
               30-540, gnl|Hg17|chr1 (231836515-231836965)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-540, gnl|bosTau2|chr28 (2145287-2144776)
               

               
               30-540, gnl|Hg17|chr1 (231836515-231836965)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	30-540, gnl\|bosTau2\|chr28 (2145287-2144776)
	30-540, gnl\|Hg17\|chr1 (231836515-231836965)

	nep (0.183925)
	gul (0.177588)
	sin (0.174948)
	ski (0.146735)
	lyg (0.133103)
	kid (0.129735)
	pgl (0.118483)
	eje (0.0988338)