Ss1.1-ruio15_m20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGCGGCGGCCGCTGAGTTGACGCTGCTGGAGAAGTCTCTGGGGCTGAGTAAAGGGAA CAAATACAGCGCCCAGGGCGAGCGCCAGATCCCAGTTCTTCAAACAAACAGTGGTCCGAG TCTGACGGGGTTGACCACCATAGCCGCTCACCTGGTCAAGCAGGCCAACAAGGAGCATCT GCTGGGGAGCTCGGCAGAGGAAAAGGCAGTGGTGCAGCAGTGGCTAGAGTTCAGGGTCAC GCGCGTGGATGGGCAGTCCAGCAAAGACGACATCCGCACTGTGTTGAAGGATCTCAATTC ATATCTTGAAGATAAAGTCTACCTTACAGGCTATAACTTCACGTTAGCAGATATCCTGTT ATACTATGGACTTCATCGCTTTATTGTTGACCTGACTGTTCAAGAAAAGGAGAAATATCT TAATGTGTCTCGCTGGTTTTGTCACATTCAGCATTACCCAGGCATCAGACAACATCTGTC TAGCGTTGTTTTCATCAAGAACAGACTATATACTAGTTCTCACTAGAAGCCGTCCGTGCT CTGCAGAAGAGTGGTGAAACATTTTAAACGGAGAGTGTATTCTGGACCAGAGGACTAATG TACATCTGTACGCAGTTGTGCTTTATGTGTGGAAGCCGGCAGAATTTGTAAAGCATATAC GTGCGTCCCAATGTTTTACTTGTTCCTTAGTTGAAATTTTGCAGTTTTTTTAAAACTTTT TTTTTAAAACTTGAACTGCTGTCGAAACTTGAGATCAAGGTATAAACTATCTTGTTTTTA TAGATGAAATTTATTTTAAGAAAGCTTATAAATCAGTGGCTTAATGCTTTTAGGAAAAAA ATAGTCCTTCCAGTGGTTGACATGTTTGGCTATTTATTGACCTCTTCCGTCGTCTTCTAA AATTCATTTTCCCCTTCTGAATATTTCTAAGTGCTTTGTTTATTAAGAACTATAGTACAT TGTGCCAAGAAGGCAAAAAAGGGAAGACAGATGGATTTGTTTTCAGATATTTATGTGCGC CAGTAAACATGGTTGAGAAAATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGCGGCGGCCGCTGAGTTGACGCTGCTGGAGAAGTCTCTGGGGCTGAGTAAAGGGAA CAAATACAGCGCCCAGGGCGAGCGCCAGATCCCAGTTCTTCAAACAAACAGTGGTCCGAG TCTGACGGGGTTGACCACCATAGCCGCTCACCTGGTCAAGCAGGCCAACAAGGAGCATCT GCTGGGGAGCTCGGCAGAGGAAAAGGCAGTGGTGCAGCAGTGGCTAGAGTTCAGGGTCAC GCGCGTGGATGGGCAGTCCAGCAAAGACGACATCCGCACTGTGTTGAAGGATCTCAATTC ATATCTTGAAGATAAAGTCTACCTTACAGGCTATAACTTCACGTTAGCAGATATCCTGTT ATACTATGGACTTCATCGCTTTATTGTTGACCTGACTGTTCAAGAAAAGGAGAAATATCT TAATGTGTCTCGCTGGTTTTGTCACATTCAGCATTACCCAGGCATCAGACAACATCTGTC TAGCGTTGTTTTCATCAAGAACAGACTATATACTAGTTCTCACTAGAAGCCGTCCGTGCT CTGCAGAAGAGTGGTGAAACATTTTAAACGGAGAGTGTATTCTGGACCAGAGGACTAATG TACATCTGTACGCAGTTGTGCTTTATGTGTGGAAGCCGGCAGAATTTGTAAAGCATATAC GTGCGTCCCAATGTTTTACTTGTTCCTTAGTTGAAATTTTGCAGTTTTTTTAAAACTTTT TTTTTAAAACTTGAACTGCTGTCGAAACTTGAGATCAAGGTATAAACTATCTTGTTTTTA TAGATGAAATTTATTTTAAGAAAGCTTATAAATCAGTGGCTTAATGCTTTTAGGAAAAAA ATAGTCCTTCCAGTGGTTGACATGTTTGGCTATTTATTGACCTCTTCCGTCGTCTTCTAA AATTCATTTTCCCCTTCTGAATATTTCTAAGTGCTTTGTTTATTAAGAACTATAGTACAT TGTGCCAAGAAGGCAAAAAAGGGAAGACAGATGGATTTGTTTTCAGATATTTATGTGCGC CAGTAAACATGGTTGAGAAAATCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 87-290, gnl|bosTau2|chr23 (39430670-39430873) | |
| 87-290, gnl|canFam2|chr35 (11038059-11037908) | |
| 87-290, gnl|canFam2|chr35 (11037837-11038059) | |
| 87-290, gnl|danRer3|chr24 (5071798-5071654) | |
| 87-290, gnl|danRer3|chr24 (5071590-5071798) | |
| 87-290, gnl|dasNov1|scaffold_12670 (37867-37716) | |
| 87-290, gnl|dasNov1|scaffold_56436 (9975-9752) | |
| 87-290, gnl|echTel1|scaffold_232100 (3012-3235) | |
| 87-290, gnl|echTel1|scaffold_320789 (50303-50451) | |
| 87-290, gnl|fr1|chrUn (173256168-173255947) | |
| 87-290, gnl|galGal2|chr2 (64041084-64040862) | |
| 87-290, gnl|hg17|chr2 (112361811-112361962) | |
| 87-290, gnl|hg17|chr6 (8042480-8042702) | |
| 87-290, gnl|Hg17|chr6 (8042701-8042498) | |
| 87-290, gnl|loxAfr1|scaffold_29748 (5604-5755) | |
| 87-290, gnl|loxAfr1|scaffold_29748 (5827-5604) | |
| 87-290, gnl|mm7|chr13 (38075134-38074985) | |
| 87-290, gnl|mm7|chr13 (38074914-38075136) | |
| 87-290, gnl|Mm7|chr13 (38075135-38074932) | |
| 87-290, gnl|monDom2|scaffold_3 (92967475-92967324) | |
| 87-290, gnl|monDom2|scaffold_3 (92967255-92967475) | |
| 87-290, gnl|oryCun1|scaffold_39948 (1661-1512) | |
| 87-290, gnl|oryCun1|scaffold_39948 (1442-1663) | |
| 87-290, gnl|panTro1|chr12_random (3617360-3617511) | |
| 87-290, gnl|panTro1|chr5 (8416967-8417189) | |
| 87-290, gnl|rheMac2|chr13 (111295262-111295413) | |
| 87-290, gnl|rheMac2|chr4 (8023087-8023309) | |
| 87-290, gnl|rn3|chr17 (32222961-32222739) | |
| 87-290, gnl|rn3|chr2 (190361345-190361194) | |
| 87-290, gnl|tetNig1|chrUn_random (7194318-7194167) | |
| 87-290, gnl|tetNig1|chrUn_random (7194115-7194318) | |
| 87-290, gnl|xenTro1|scaffold_64 (2319686-2319535) | |
| 87-290, gnl|xenTro1|scaffold_64 (2319475-2319691) | |
| 372-1044, gnl|bosTau2|chr23 (39500142-39499482) | |
| 372-1044, gnl|Hg17|chr6 (8025277-8024626) | |
| 372-1044, gnl|Mm7|chr13 (38065218-38064580) | |
| 544-841, gnl|bosTau2|chr19 (30711650-30711947) | |
| 544-841, gnl|Hg17|chr6 (8025104-8024824) | |
| 544-841, gnl|Mm7|chr13 (38065041-38064772) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-290, gnl|bosTau2|chr23 (39430670-39430873) | |
| 87-290, gnl|canFam2|chr35 (11038059-11037908) | |
| 87-290, gnl|canFam2|chr35 (11037837-11038059) | |
| 87-290, gnl|danRer3|chr24 (5071798-5071654) | |
| 87-290, gnl|danRer3|chr24 (5071590-5071798) | |
| 87-290, gnl|dasNov1|scaffold_12670 (37867-37716) | |
| 87-290, gnl|dasNov1|scaffold_56436 (9975-9752) | |
| 87-290, gnl|echTel1|scaffold_232100 (3012-3235) | |
| 87-290, gnl|echTel1|scaffold_320789 (50303-50451) | |
| 87-290, gnl|fr1|chrUn (173256168-173255947) | |
| 87-290, gnl|galGal2|chr2 (64041084-64040862) | |
| 87-290, gnl|hg17|chr2 (112361811-112361962) | |
| 87-290, gnl|hg17|chr6 (8042480-8042702) | |
| 87-290, gnl|Hg17|chr6 (8042701-8042498) | |
| 87-290, gnl|loxAfr1|scaffold_29748 (5604-5755) | |
| 87-290, gnl|loxAfr1|scaffold_29748 (5827-5604) | |
| 87-290, gnl|mm7|chr13 (38075134-38074985) | |
| 87-290, gnl|mm7|chr13 (38074914-38075136) | |
| 87-290, gnl|Mm7|chr13 (38075135-38074932) | |
| 87-290, gnl|monDom2|scaffold_3 (92967475-92967324) | |
| 87-290, gnl|monDom2|scaffold_3 (92967255-92967475) | |
| 87-290, gnl|oryCun1|scaffold_39948 (1661-1512) | |
| 87-290, gnl|oryCun1|scaffold_39948 (1442-1663) | |
| 87-290, gnl|panTro1|chr12_random (3617360-3617511) | |
| 87-290, gnl|panTro1|chr5 (8416967-8417189) | |
| 87-290, gnl|rheMac2|chr13 (111295262-111295413) | |
| 87-290, gnl|rheMac2|chr4 (8023087-8023309) | |
| 87-290, gnl|rn3|chr17 (32222961-32222739) | |
| 87-290, gnl|rn3|chr2 (190361345-190361194) | |
| 87-290, gnl|tetNig1|chrUn_random (7194318-7194167) | |
| 87-290, gnl|tetNig1|chrUn_random (7194115-7194318) | |
| 87-290, gnl|xenTro1|scaffold_64 (2319686-2319535) | |
| 87-290, gnl|xenTro1|scaffold_64 (2319475-2319691) | |
| 372-1044, gnl|bosTau2|chr23 (39500142-39499482) | |
| 372-1044, gnl|Hg17|chr6 (8025277-8024626) | |
| 372-1044, gnl|Mm7|chr13 (38065218-38064580) | |
| 544-841, gnl|bosTau2|chr19 (30711650-30711947) | |
| 544-841, gnl|Hg17|chr6 (8025104-8024824) | |
| 544-841, gnl|Mm7|chr13 (38065041-38064772) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| lin (0.873617) | |
| ret (0.514933) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| rec (0.346141) | |
| fco (0.314416) | |
| sug (0.254582) | |
| tes (0.207814) | |
| col (0.195008) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.873617) | |
| ret (0.514933) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| rec (0.346141) | |
| fco (0.314416) | |
| sug (0.254582) | |
| tes (0.207814) | |
| col (0.195008) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| ste (0.135208) | |
| pla (0.133672) | |
| cov (0.132153) | |
| kid (0.129735) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) |