Non-Coding RNA Search

Ss1.1-ruio15_o22.5

Sequence:


               
               CCTAGCCAGTTTAATTACATCCTGAGGCTCCTGATGTATGCAGCTTATTGCATAGAGGTG
ATAGCAGGTTTAATGCTAGTCACAGTATTAACTAATTCTTAATATGTAGACGTGATTCAA
ATGACAAAGAAGGACATCCAGCTTCTGTGAATAGTTTATCTTTTGTGGGGTCTTTTTCCT
TATCCCAAATACTGCACTTGACAAGGCAGACGATTATATCTGCCTAATTTATCTAGCAGT
TTTTTTTTTGTCTTTGTCTTTGCCATTTCTTGGGCCGCTCCCGCAGCATATGGAGGTTCC
CAGGCTAGGGGGTCAAATCGGAGCTGTAGCCACTGGCCTATGCAAGAGCCACAGCAACAT
GGGATCCGAGCCGCATCTGCAACCCACACCACAGCTCATGGCAATGCCGGATCATCAACC
CACTGAGCAAGGGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAAC
CACTGCACCACGACAGGAACTCCTATCTAGCAGTTTTAAAGAACACCATTCAGAATAGAA
AAGTAGCTCCAGACTAAACTGTGGTGAATCAGTTACTTTACCACATAGTAATCAAGCAAG
CCTGAGATAGACGTGGTCATGTTTTTCTAATGAGTCCTAGTAAATGTACACTTATACTTA
ATTTAACCGAAACTATGATCCCTTCTTCAGCATGTAATCACCACTGTTTCACATGAGACT
ATTGTACATTCTTTTCTTTTTTAAAATCTACTATCTTCTGATTTTTTAAATGACGATGGC
AATTATATTAATAAACAATATACCCTTTATGGTACATGCTGTTTACAGAAGATGGTTTCT
AAACACAACTAAAATTCATTTTTCTACGTTAATGTTACATCACAGAAAGTGTTTATTTTT
AAATTATTTCCATTAAGGTTATATTGCAATACATTGATCTTCAAACCAAACATACAGAAA
TCTACAAGCAGGTTTTGCATGTAACTAACATTAATAGAATTAGGGCCCTTTTAAATTTTT
ATTTTATTTATTTATTTTTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGCCAGTTTAATTACATCCTGAGGCTCCTGATGTATGCAGCTTATTGCATAGAGGTG
ATAGCAGGTTTAATGCTAGTCACAGTATTAACTAATTCTTAATATGTAGACGTGATTCAA
ATGACAAAGAAGGACATCCAGCTTCTGTGAATAGTTTATCTTTTGTGGGGTCTTTTTCCT
TATCCCAAATACTGCACTTGACAAGGCAGACGATTATATCTGCCTAATTTATCTAGCAGT
TTTTTTTTTGTCTTTGTCTTTGCCATTTCTTGGGCCGCTCCCGCAGCATATGGAGGTTCC
CAGGCTAGGGGGTCAAATCGGAGCTGTAGCCACTGGCCTATGCAAGAGCCACAGCAACAT
GGGATCCGAGCCGCATCTGCAACCCACACCACAGCTCATGGCAATGCCGGATCATCAACC
CACTGAGCAAGGGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAAC
CACTGCACCACGACAGGAACTCCTATCTAGCAGTTTTAAAGAACACCATTCAGAATAGAA
AAGTAGCTCCAGACTAAACTGTGGTGAATCAGTTACTTTACCACATAGTAATCAAGCAAG
CCTGAGATAGACGTGGTCATGTTTTTCTAATGAGTCCTAGTAAATGTACACTTATACTTA
ATTTAACCGAAACTATGATCCCTTCTTCAGCATGTAATCACCACTGTTTCACATGAGACT
ATTGTACATTCTTTTCTTTTTTAAAATCTACTATCTTCTGATTTTTTAAATGACGATGGC
AATTATATTAATAAACAATATACCCTTTATGGTACATGCTGTTTACAGAAGATGGTTTCT
AAACACAACTAAAATTCATTTTTCTACGTTAATGTTACATCACAGAAAGTGTTTATTTTT
AAATTATTTCCATTAAGGTTATATTGCAATACATTGATCTTCAAACCAAACATACAGAAA
TCTACAAGCAGGTTTTGCATGTAACTAACATTAATAGAATTAGGGCCCTTTTAAATTTTT
ATTTTATTTATTTATTTTTGTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               635-745, - strand, RNAz p=0.890862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               635-745, - strand, RNAz p=0.890862

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-243, gnl|bosTau2|chr10 (28737977-28737732)
               

               
               1-243, gnl|Hg17|chr14 (49864861-49864617)
               

               
               1-243, gnl|Mm7|chr12 (67686365-67686124)
               


               
               504-745, gnl|bosTau2|chr10 (28737745-28737512)
               

               
               504-745, gnl|canFam2|chr8 (29778540-29778947)
               

               
               504-745, gnl|dasNov1|scaffold_40816 (6897-6525)
               

               
               504-745, gnl|echTel1|scaffold_288392 (47932-47557)
               

               
               504-745, gnl|hg17|chr14 (49864263-49864628)
               

               
               504-745, gnl|Hg17|chr14 (49864630-49864374)
               

               
               504-745, gnl|loxAfr1|scaffold_48539 (10526-10119)
               

               
               504-745, gnl|mm7|chr12 (67685784-67686135)
               

               
               504-745, gnl|Mm7|chr12 (67686137-67685925)
               

               
               504-745, gnl|oryCun1|scaffold_182585 (5053-4680)
               

               
               504-745, gnl|panTro1|chr15 (49278195-49278562)
               

               
               504-745, gnl|rheMac2|chr7 (113390914-113391284)
               

               
               504-745, gnl|rn3|chr6 (91802924-91803273)
               


               
               753-1015, gnl|bosTau2|chr10 (28737529-28737268)
               

               
               753-1015, gnl|Hg17|chr14 (49864391-49863856)
               

               
               753-1015, gnl|Mm7|chr12 (67685942-67685674)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr10 (28737977-28737732)
               

               
               1-243, gnl|Hg17|chr14 (49864861-49864617)
               

               
               1-243, gnl|Mm7|chr12 (67686365-67686124)
               


               
               504-745, gnl|bosTau2|chr10 (28737745-28737512)
               

               
               504-745, gnl|canFam2|chr8 (29778540-29778947)
               

               
               504-745, gnl|dasNov1|scaffold_40816 (6897-6525)
               

               
               504-745, gnl|echTel1|scaffold_288392 (47932-47557)
               

               
               504-745, gnl|hg17|chr14 (49864263-49864628)
               

               
               504-745, gnl|Hg17|chr14 (49864630-49864374)
               

               
               504-745, gnl|loxAfr1|scaffold_48539 (10526-10119)
               

               
               504-745, gnl|mm7|chr12 (67685784-67686135)
               

               
               504-745, gnl|Mm7|chr12 (67686137-67685925)
               

               
               504-745, gnl|oryCun1|scaffold_182585 (5053-4680)
               

               
               504-745, gnl|panTro1|chr15 (49278195-49278562)
               

               
               504-745, gnl|rheMac2|chr7 (113390914-113391284)
               

               
               504-745, gnl|rn3|chr6 (91802924-91803273)
               


               
               753-1015, gnl|bosTau2|chr10 (28737529-28737268)
               

               
               753-1015, gnl|Hg17|chr14 (49864391-49863856)
               

               
               753-1015, gnl|Mm7|chr12 (67685942-67685674)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	1-243, gnl\|bosTau2\|chr10 (28737977-28737732)
	1-243, gnl\|Hg17\|chr14 (49864861-49864617)
	1-243, gnl\|Mm7\|chr12 (67686365-67686124)

	504-745, gnl\|bosTau2\|chr10 (28737745-28737512)
	504-745, gnl\|canFam2\|chr8 (29778540-29778947)
	504-745, gnl\|dasNov1\|scaffold_40816 (6897-6525)
	504-745, gnl\|echTel1\|scaffold_288392 (47932-47557)
	504-745, gnl\|hg17\|chr14 (49864263-49864628)
	504-745, gnl\|Hg17\|chr14 (49864630-49864374)
	504-745, gnl\|loxAfr1\|scaffold_48539 (10526-10119)
	504-745, gnl\|mm7\|chr12 (67685784-67686135)
	504-745, gnl\|Mm7\|chr12 (67686137-67685925)
	504-745, gnl\|oryCun1\|scaffold_182585 (5053-4680)
	504-745, gnl\|panTro1\|chr15 (49278195-49278562)
	504-745, gnl\|rheMac2\|chr7 (113390914-113391284)
	504-745, gnl\|rn3\|chr6 (91802924-91803273)

	753-1015, gnl\|bosTau2\|chr10 (28737529-28737268)
	753-1015, gnl\|Hg17\|chr14 (49864391-49863856)
	753-1015, gnl\|Mm7\|chr12 (67685942-67685674)