Non-Coding RNA Search

Ss1.1-ruio16_l15.5

Sequence:


               
               CATATGTCATGATACAGTTATAATTTTATTGATAAAACTGTCATTTTATTTTATTTTTGA
TCTTTAAAAATCTTTTCTTAGTATTTTGATTTTAGATATTAATTTAATACCTTTTATTTT
TACTACTTTGACAGGGGAGGTTCGTCTAAGTATTACTGATAACAGGGATTCAACTTGAAG
TAAAAGTCAGGAAGAGCAATAATCACATCTTTTCAAAGTGGAATATACAATTCTGTTGTC
ATGATTAGTTTATACGATAACTATAAATAGAGGGATAAGAGTTGAAAATGTGATATTCCC
TGATATAAGTCATGGTACTTTGAAGTTGTATGGTTTAAGGGGTATTTTTATGAAGGAGTC
ATAAGTATACTATTTTTCATTTTCAAGAACATAAAAAAGTGAAGGATCATCTAGCACTAC
TTTATATTTGGTTCACTTATACCTAAAAATATATTTTGAAGATTTACACATGCAGTTAGA
AATTATATTAATCCAGGGCCTGAAATTATTAGGCAAGGTTCTTCTTGAGAGTTATTTTCA
TATCTGTCAAGTGTTAAACTAATGTTGCATCCTTTTTAATAAGATTCTATGAAAGATTTT
GAGCTATTAAAGTTATTTCCTAAAGGATAGCAACTATGTAGTACTTACCCTCTTTTTTCA
ATCTCCATAAAAAGCTGCGTTCTTAGCTATTACTCCAAATAAAATTTTTCTTGTTTGCTA
ATCAGTATAGTATAACACAGTTGTTTTCAGCCTGTTAACCCAAATGTCCAAAATGGAGAT
CTCAGTAGTTTTAAAAAGAGGCCATTGGGATGGATATGTTTCACCTTCAAAATCAAATAC
TGAACACTATGAAAAGTGTTATGACCAGTATACAGTTGGAGACACAAGTTTGAGTTACAC
AATTTTAATAATTAAATTCATAAAATGTTTAATATCTTAAATGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATGTCATGATACAGTTATAATTTTATTGATAAAACTGTCATTTTATTTTATTTTTGA
TCTTTAAAAATCTTTTCTTAGTATTTTGATTTTAGATATTAATTTAATACCTTTTATTTT
TACTACTTTGACAGGGGAGGTTCGTCTAAGTATTACTGATAACAGGGATTCAACTTGAAG
TAAAAGTCAGGAAGAGCAATAATCACATCTTTTCAAAGTGGAATATACAATTCTGTTGTC
ATGATTAGTTTATACGATAACTATAAATAGAGGGATAAGAGTTGAAAATGTGATATTCCC
TGATATAAGTCATGGTACTTTGAAGTTGTATGGTTTAAGGGGTATTTTTATGAAGGAGTC
ATAAGTATACTATTTTTCATTTTCAAGAACATAAAAAAGTGAAGGATCATCTAGCACTAC
TTTATATTTGGTTCACTTATACCTAAAAATATATTTTGAAGATTTACACATGCAGTTAGA
AATTATATTAATCCAGGGCCTGAAATTATTAGGCAAGGTTCTTCTTGAGAGTTATTTTCA
TATCTGTCAAGTGTTAAACTAATGTTGCATCCTTTTTAATAAGATTCTATGAAAGATTTT
GAGCTATTAAAGTTATTTCCTAAAGGATAGCAACTATGTAGTACTTACCCTCTTTTTTCA
ATCTCCATAAAAAGCTGCGTTCTTAGCTATTACTCCAAATAAAATTTTTCTTGTTTGCTA
ATCAGTATAGTATAACACAGTTGTTTTCAGCCTGTTAACCCAAATGTCCAAAATGGAGAT
CTCAGTAGTTTTAAAAAGAGGCCATTGGGATGGATATGTTTCACCTTCAAAATCAAATAC
TGAACACTATGAAAAGTGTTATGACCAGTATACAGTTGGAGACACAAGTTTGAGTTACAC
AATTTTAATAATTAAATTCATAAAATGTTTAATATCTTAAATGCCAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-948, gnl|bosTau2|chr27 (9680944-9681915)
               

               
               1-948, gnl|Hg17|chr4 (186457057-186456165)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr27 (9680944-9681915)
               

               
               1-948, gnl|Hg17|chr4 (186457057-186456165)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-948, gnl\|bosTau2\|chr27 (9680944-9681915)
	1-948, gnl\|Hg17\|chr4 (186457057-186456165)

	kid (0.259471)
	tra (0.246184)
	tes (0.207814)
	aor (0.195274)
	mga (0.160205)
	bfe (0.149858)
	lin (0.145603)
	hlv (0.139256)
	nmm (0.132802)
	ret (0.128733)
	eru (0.120048)
	jca (0.11396)