Non-Coding RNA Search

Ss1.1-ruio17_a22.5

Sequence:


               
               ACATGCCCGACTGCGGCAAAGGAGGGTTTGTGGATCTCCCGGAATATCCCTTTGCACTGG
AGCCCAGAGTTGCAACCAGATGGGACATTCAAAAATATGCCAGAGAAGCCTACAACCTGG
GGATCAGGTACATAGGAGGGTGCTGTGGATTTGAGCCCTACCACATCAGGGCCATTGCAG
AGGAGCTGGCCCCAGAAAGGGGATTTTTGCCTCCAGCTTCAGAGAAACATGGCAGCTGGG
GAAGTGGTCTCAATATGCACACCAAGCCCTGGATTAGAGCCAGGGCTAGAAGGGAATACT
GGGAGAACCTGCTGCCGGCTTCGGGCAGACCTTTCTGTCCTTCACTGTCAAAGCCAGATG
TCTAAGCAGTCGTCAAAGAAAACACTGTAATAACAGAAAGGAAAGAAATCCCCCTCGAGC
CTCATCTGGAACCCTTCCTCACCTCTGTCCTCAGCCCACCCTGACGTCTCCAGCTACTGA
ACAGCTAATGTGCTGCCAACTCAACACAGGATGCGAACTGCGCTCCTGCTGTGGTTAAGC
ACCAAGCAGGATGCTGGGGGGAGATGCGAAGATGGTAAGAAAGACCCCTGTCCTCCAGGT
ACCGACGGTCCAGTCATGTCGCTGGACATGCTGTGGACGGGCAGCAGGAAGAGTGAAACT
TGTCTTTTAGAGTGAATCTGAGATTTTAAACTAACCAGATGTCACTGAGCACTGAACCCA
GTGATGAATGCGGGTACATGAGATGAATAGAGCAGCAATCTAAACTAAAATTAAAGCAAT
GAGTCCTTTCTTAAATGATGTGTATAGTTATTCCAAAGACAGCGCCAAAGGAAGAGAGGC
AAAAAAATGTTTTGAGCAATGGCAAGATTACTGAAATAATCATATAAAGTTCCAAATCCA
TTGCTTTCAAAGTTTAGTTACTTTAAAGTGTTAGGTCCTAGAACTTTTAAAACATGTCTC
TGTAATCACAAATAGCTAGATTATAAACTGCTAAGGACAAGGACTGTGTGATATGCTTCT
TAGGTTTGTCCTCCAAGTATTTAACATTGTGCCAGGTATACAAATAGATGCTCAATGAAA
TTCTTATTGTTGATTGTTCAAAATAAGTAAAAATAAACAGTTTCAGAAGACCTTTTTAAA
AGTCAGAGTTCAAATCTATCTTGGTCTAATATTCTCTTGACTTATATTTAAGCTATTTGC
TATGTATGGATTTCTCTCTGTATTTTCCAAACTATGTATCAATTTGCAACAACTAATGAA
AATAAAAATAATTTACCCTTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGCCCGACTGCGGCAAAGGAGGGTTTGTGGATCTCCCGGAATATCCCTTTGCACTGG
AGCCCAGAGTTGCAACCAGATGGGACATTCAAAAATATGCCAGAGAAGCCTACAACCTGG
GGATCAGGTACATAGGAGGGTGCTGTGGATTTGAGCCCTACCACATCAGGGCCATTGCAG
AGGAGCTGGCCCCAGAAAGGGGATTTTTGCCTCCAGCTTCAGAGAAACATGGCAGCTGGG
GAAGTGGTCTCAATATGCACACCAAGCCCTGGATTAGAGCCAGGGCTAGAAGGGAATACT
GGGAGAACCTGCTGCCGGCTTCGGGCAGACCTTTCTGTCCTTCACTGTCAAAGCCAGATG
TCTAAGCAGTCGTCAAAGAAAACACTGTAATAACAGAAAGGAAAGAAATCCCCCTCGAGC
CTCATCTGGAACCCTTCCTCACCTCTGTCCTCAGCCCACCCTGACGTCTCCAGCTACTGA
ACAGCTAATGTGCTGCCAACTCAACACAGGATGCGAACTGCGCTCCTGCTGTGGTTAAGC
ACCAAGCAGGATGCTGGGGGGAGATGCGAAGATGGTAAGAAAGACCCCTGTCCTCCAGGT
ACCGACGGTCCAGTCATGTCGCTGGACATGCTGTGGACGGGCAGCAGGAAGAGTGAAACT
TGTCTTTTAGAGTGAATCTGAGATTTTAAACTAACCAGATGTCACTGAGCACTGAACCCA
GTGATGAATGCGGGTACATGAGATGAATAGAGCAGCAATCTAAACTAAAATTAAAGCAAT
GAGTCCTTTCTTAAATGATGTGTATAGTTATTCCAAAGACAGCGCCAAAGGAAGAGAGGC
AAAAAAATGTTTTGAGCAATGGCAAGATTACTGAAATAATCATATAAAGTTCCAAATCCA
TTGCTTTCAAAGTTTAGTTACTTTAAAGTGTTAGGTCCTAGAACTTTTAAAACATGTCTC
TGTAATCACAAATAGCTAGATTATAAACTGCTAAGGACAAGGACTGTGTGATATGCTTCT
TAGGTTTGTCCTCCAAGTATTTAACATTGTGCCAGGTATACAAATAGATGCTCAATGAAA
TTCTTATTGTTGATTGTTCAAAATAAGTAAAAATAAACAGTTTCAGAAGACCTTTTTAAA
AGTCAGAGTTCAAATCTATCTTGGTCTAATATTCTCTTGACTTATATTTAAGCTATTTGC
TATGTATGGATTTCTCTCTGTATTTTCCAAACTATGTATCAATTTGCAACAACTAATGAA
AATAAAAATAATTTACCCTTTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62642739|ref|XP_574836.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62642739|ref|XP_574836.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               281-1285, gnl|bosTau2|chr10 (4188278-4189311)
               

               
               281-1285, gnl|Hg17|chr5 (78420069-78421650)
               

               
               281-1285, gnl|Mm7|chr13 (90720068-90719179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-1285, gnl|bosTau2|chr10 (4188278-4189311)
               

               
               281-1285, gnl|Hg17|chr5 (78420069-78421650)
               

               
               281-1285, gnl|Mm7|chr13 (90720068-90719179)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cki (3.96563)
               

               
               kid (3.63259)
               

               
               sme (0.610874)
               

               
               lun (0.601956)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (3.96563)
               

               
               kid (3.63259)
               

               
               sme (0.610874)
               

               
               lun (0.601956)

	281-1285, gnl\|bosTau2\|chr10 (4188278-4189311)
	281-1285, gnl\|Hg17\|chr5 (78420069-78421650)
	281-1285, gnl\|Mm7\|chr13 (90720068-90719179)