Non-Coding RNA Search

Ss1.1-ruio17_h23.5

Sequence:


               
               CTTTACTTTTTTTTTTTTTTTTAATTTATCCCATGATTACACTTGGCTGTCTCTCTGGAT
ATCCAAGGAACATAAGGTCTATCTTTATAATTCTGACGAAGGCTGAATCTTATACATTAT
CAGGGAAGTTAGATGAGATTGAGATTGGCAAATGGACAAAAACTAGTAAGAAAAAGTGAT
CCTAGAAAATGCTTTTTTTTTTTTTACCCCATCTTATATTTGTGGAAAGATCATAGTTTA
AAATCTTGGGAAATTTGAGCTATGAAAGTTTTCATGGCAGTTCATATAGTGTATGGGTTG
ACATAATAGAAATCATCTGATACTATTTCTGTAACTACTGAGTCATTCCCCCTTCATTAA
ACTTCTTTTGTTCCATTTGAATAGGGAATTAACATCTGAATGGAAGATCCTACTAATTTC
CAAGGGATTCTGAGAAATTTTTGTGTTCAACAGTTGGCGAGTTCTTTACTCTTTCAGTTT
AGGTAACATCTTTTTTTTTTTTAATGTAGGTGCAGATTTTCTGTTACTTCTGTGTTTTAG
GGGGGGCAGGATTATTGACTTTTGTGGTAAAATTCATGTAAATTTTATTTCTTGGTGACT
TTGGCTTATACAACTTATCTTTAAACCCTTGAGCAATCTGTATACAATGAAGAGGTTTTT
GACATTTATTCTTATACTAAGTTGATTGACTCTAGAATTTAGACGTATTTACTTCTGTCA
AGTTTTGAATCTCTGCAGAGTTGCATGTAGATAGCTTTTATTTCTGTGCATTTAAAGTAT
CCATTTAGAAAATATCTGCAAGCTAAAAATGAGAAGAAATAGAAATGTATTTTTTATGAA
CATTTTGATACACATTTCATCAAGTTTATTGGTAATGAATTTCTTACACTGGTTATAATC
AGTATTTGATTCAAAGAGAGGAAGCATTCATTATTGACATACTATATGGGCTTTTTTTAT
TCCATCCTTTACAATTTACCAAGGTTGGGGCTGTCAAAATTGTATTTTTATCATGGAAAA
AAATTTCAACTCCCAGATCATAATGTTAAACAGAATTGGAGTATTTTCTTTAGAACTACT
TGAAATGGCAAATGAAAGCTTATTATAGAATGCATGTATTTTCTTTTCTCTCTCTGGAAC
CAGTATATTGCTGGCAGCTATTGTATTAAAAAAATAAAGTATATTTTCACTATCAAAAAA
AAAAAAAAAAAACCCCCTCATGATAATAAATAACAGCTCCAGGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTACTTTTTTTTTTTTTTTTAATTTATCCCATGATTACACTTGGCTGTCTCTCTGGAT
ATCCAAGGAACATAAGGTCTATCTTTATAATTCTGACGAAGGCTGAATCTTATACATTAT
CAGGGAAGTTAGATGAGATTGAGATTGGCAAATGGACAAAAACTAGTAAGAAAAAGTGAT
CCTAGAAAATGCTTTTTTTTTTTTTACCCCATCTTATATTTGTGGAAAGATCATAGTTTA
AAATCTTGGGAAATTTGAGCTATGAAAGTTTTCATGGCAGTTCATATAGTGTATGGGTTG
ACATAATAGAAATCATCTGATACTATTTCTGTAACTACTGAGTCATTCCCCCTTCATTAA
ACTTCTTTTGTTCCATTTGAATAGGGAATTAACATCTGAATGGAAGATCCTACTAATTTC
CAAGGGATTCTGAGAAATTTTTGTGTTCAACAGTTGGCGAGTTCTTTACTCTTTCAGTTT
AGGTAACATCTTTTTTTTTTTTAATGTAGGTGCAGATTTTCTGTTACTTCTGTGTTTTAG
GGGGGGCAGGATTATTGACTTTTGTGGTAAAATTCATGTAAATTTTATTTCTTGGTGACT
TTGGCTTATACAACTTATCTTTAAACCCTTGAGCAATCTGTATACAATGAAGAGGTTTTT
GACATTTATTCTTATACTAAGTTGATTGACTCTAGAATTTAGACGTATTTACTTCTGTCA
AGTTTTGAATCTCTGCAGAGTTGCATGTAGATAGCTTTTATTTCTGTGCATTTAAAGTAT
CCATTTAGAAAATATCTGCAAGCTAAAAATGAGAAGAAATAGAAATGTATTTTTTATGAA
CATTTTGATACACATTTCATCAAGTTTATTGGTAATGAATTTCTTACACTGGTTATAATC
AGTATTTGATTCAAAGAGAGGAAGCATTCATTATTGACATACTATATGGGCTTTTTTTAT
TCCATCCTTTACAATTTACCAAGGTTGGGGCTGTCAAAATTGTATTTTTATCATGGAAAA
AAATTTCAACTCCCAGATCATAATGTTAAACAGAATTGGAGTATTTTCTTTAGAACTACT
TGAAATGGCAAATGAAAGCTTATTATAGAATGCATGTATTTTCTTTTCTCTCTCTGGAAC
CAGTATATTGCTGGCAGCTATTGTATTAAAAAAATAAAGTATATTTTCACTATCAAAAAA
AAAAAAAAAAAACCCCCTCATGATAATAAATAACAGCTCCAGGTAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               91-524, gnl|bosTau2|chr2 (81320224-81319788)
               

               
               91-524, gnl|Hg17|chr1 (234560794-234560373)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-524, gnl|bosTau2|chr2 (81320224-81319788)
               

               
               91-524, gnl|Hg17|chr1 (234560794-234560373)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               kid (1.16762)
               

               
               liv (0.731422)
               

               
               tra (0.61546)
               

               
               aor (0.585823)
               

               
               cbl (0.573987)
               

               
               fhi (0.508733)
               

               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               liv (0.731422)
               

               
               tra (0.61546)
               

               
               aor (0.585823)
               

               
               cbl (0.573987)
               

               
               fhi (0.508733)
               

               
               bfe (0.449573)
               

               
               vin (0.332557)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	91-524, gnl\|bosTau2\|chr2 (81320224-81319788)
	91-524, gnl\|Hg17\|chr1 (234560794-234560373)

	kid (1.16762)
	liv (0.731422)
	tra (0.61546)
	aor (0.585823)
	cbl (0.573987)
	fhi (0.508733)
	bfe (0.449573)
	vin (0.332557)
	nmm (0.265604)
	ute (0.265569)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	mgm (0.180343)
	eye (0.170503)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	nca (0.136874)
	bla (0.124347)
	eru (0.120048)
	jej (0.0989218)
	eje (0.0988338)