Ss1.1-ruio17_h8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCTACGCTTCGATCAAGATACCGGGACGCTCGGGCCGCGATGCCCAGTGAAACTCTC TGGGAAATCGCAAAAGCTGAAGTGGAAAAACGGGGAAGTAATGGAAGTGAAGGTGATGGA GTTGAAATTGGAGAAAAGTCTGTGTTCTTCATTGGCAGTAAGAACGGGGGGAAGACAACT ATTATTCTAAGGTGTCTTGACAGGGATGAGCCACCGAAACCAACCTTAGCTTTGGAGTAC ACATATGGAAGGAGAGCGAAAGGACATAACATACCAAAAGATATTGCTCACTTTTGGGAA CTAGGTGGAGGGACATCTTTACTGGACTTAATCAGCATACCAATCACAAGTGACACCTTA CGGACATTTTCTGTCGTTCTTGTTTTGGATCTTTCAAAACCTAATGACCTTTGGCCCACC ATGGAGAATCTGTTGCAAGCCACAAAACGTCATGTAGATAAAGTGATAATGAAGCTGGGG AAGAAAAATTCTAAAGCAGCTTCTGAAATGAGACAGAAGATATGGAGTAATATGCAGAAG GACCATCCAGATCGTGAATTAATTGATCCATTCCCAATTCCTCTGGTCATAATTGGAAGT AAATACGATATTTTCCAGGACTTTGACTCTGAGAAGAGAAAGGTAATATGCAAGACACTT CGTTTTGTTGCACATTATTACGGAGCATCGTTAATGTTTACCAGTAAATCAGAAGCTCTA TTACTAAAAATACGTGGAGTTATTAACCAGTTGGCATTTGGCATTGACAAAAGTAAATCA ATATGTGTGGATCAGAATAAACCACTGTTTATCACAGCAGGATTGGATTCTTTAAGTCAA ATAGGATTGCCTCCTGTTCCTGATAATGACATTGGAAAGATTCAAGCCCATTCACCAATG GACTTGTGGAAAAAAGTATATGAAAAGCTCTTTCCACCAAAGAGTATCAGCACACAAAAA GATGTCAAGGACCCTGCAAGAGACCCTCAGTACGCTGAATGTGAGGTTGATGAAATGAGA ATCCAGAAGGATCAGGAACTAGAACAGTACAAAAGAAGTTCTTCCAAGTCTTGGAAGCAA ATTGAGCTTGATTCCTGAACCTACTTCAACTACAGTGAATTTATTTCTTCTTTCCCAAAT ATAAGTAAGATCATTTTATTAATTAACTATTATAATAATGAGGAAAGTTTAGACATAAAC TTTGTTTAAAGGAAAACAAACATTTGTTTAAAGGAAAAGCGGGAATTTCTTGTTAGTGCA ACTCCCTGGATACTTTTAAAGTCTCTTAAAGGAAAAATTATATGATTACTTGTAATATTT TTTTAAATAAAAAGAATCTTGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCTACGCTTCGATCAAGATACCGGGACGCTCGGGCCGCGATGCCCAGTGAAACTCTC TGGGAAATCGCAAAAGCTGAAGTGGAAAAACGGGGAAGTAATGGAAGTGAAGGTGATGGA GTTGAAATTGGAGAAAAGTCTGTGTTCTTCATTGGCAGTAAGAACGGGGGGAAGACAACT ATTATTCTAAGGTGTCTTGACAGGGATGAGCCACCGAAACCAACCTTAGCTTTGGAGTAC ACATATGGAAGGAGAGCGAAAGGACATAACATACCAAAAGATATTGCTCACTTTTGGGAA CTAGGTGGAGGGACATCTTTACTGGACTTAATCAGCATACCAATCACAAGTGACACCTTA CGGACATTTTCTGTCGTTCTTGTTTTGGATCTTTCAAAACCTAATGACCTTTGGCCCACC ATGGAGAATCTGTTGCAAGCCACAAAACGTCATGTAGATAAAGTGATAATGAAGCTGGGG AAGAAAAATTCTAAAGCAGCTTCTGAAATGAGACAGAAGATATGGAGTAATATGCAGAAG GACCATCCAGATCGTGAATTAATTGATCCATTCCCAATTCCTCTGGTCATAATTGGAAGT AAATACGATATTTTCCAGGACTTTGACTCTGAGAAGAGAAAGGTAATATGCAAGACACTT CGTTTTGTTGCACATTATTACGGAGCATCGTTAATGTTTACCAGTAAATCAGAAGCTCTA TTACTAAAAATACGTGGAGTTATTAACCAGTTGGCATTTGGCATTGACAAAAGTAAATCA ATATGTGTGGATCAGAATAAACCACTGTTTATCACAGCAGGATTGGATTCTTTAAGTCAA ATAGGATTGCCTCCTGTTCCTGATAATGACATTGGAAAGATTCAAGCCCATTCACCAATG GACTTGTGGAAAAAAGTATATGAAAAGCTCTTTCCACCAAAGAGTATCAGCACACAAAAA GATGTCAAGGACCCTGCAAGAGACCCTCAGTACGCTGAATGTGAGGTTGATGAAATGAGA ATCCAGAAGGATCAGGAACTAGAACAGTACAAAAGAAGTTCTTCCAAGTCTTGGAAGCAA ATTGAGCTTGATTCCTGAACCTACTTCAACTACAGTGAATTTATTTCTTCTTTCCCAAAT ATAAGTAAGATCATTTTATTAATTAACTATTATAATAATGAGGAAAGTTTAGACATAAAC TTTGTTTAAAGGAAAACAAACATTTGTTTAAAGGAAAAGCGGGAATTTCTTGTTAGTGCA ACTCCCTGGATACTTTTAAAGTCTCTTAAAGGAAAAATTATATGATTACTTGTAATATTT TTTTAAATAAAAAGAATCTTGCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 49-169, gnl|bosTau2|chr15 (30771878-30771998) | |
| 49-169, gnl|canFam2|chr10 (49360451-49360591) | |
| 49-169, gnl|dasNov1|scaffold_851 (94927-95077) | |
| 49-169, gnl|galGal2|chr3 (21537262-21537405) | |
| 49-169, gnl|hg17|chr2 (43915547-43915698) | |
| 49-169, gnl|Hg17|chr2 (43915570-43915690) | |
| 49-169, gnl|loxAfr1|scaffold_19033 (20315-20165) | |
| 49-169, gnl|mm7|chr17 (82922711-82922858) | |
| 49-169, gnl|Mm7|chr17 (82922730-82922850) | |
| 49-169, gnl|monDom2|scaffold_1 (2387123-2387271) | |
| 49-169, gnl|oryCun1|scaffold_157757 (1065-915) | |
| 49-169, gnl|panTro1|chr12_random (18368331-18368180) | |
| 49-169, gnl|rheMac2|chr13 (43879341-43879492) | |
| 49-169, gnl|rn3|chr6 (7995314-7995462) | |
| 357-548, gnl|bosTau2|chr15 (30791824-30792015) | |
| 357-548, gnl|Hg17|chr2 (43933241-43933432) | |
| 357-548, gnl|Mm7|chr17 (82937313-82937504) | |
| 842-948, gnl|bosTau2|chr15 (30802043-30802148) | |
| 842-948, gnl|Hg17|chr2 (43943429-43943534) | |
| 842-948, gnl|Mm7|chr17 (82943660-82943765) | |
| 1034-1216, gnl|bosTau2|chr15 (30807798-30807980) | |
| 1034-1216, gnl|Hg17|chr2 (43948493-43948678) | |
| 1034-1216, gnl|Mm7|chr17 (82949746-82949920) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-169, gnl|bosTau2|chr15 (30771878-30771998) | |
| 49-169, gnl|canFam2|chr10 (49360451-49360591) | |
| 49-169, gnl|dasNov1|scaffold_851 (94927-95077) | |
| 49-169, gnl|galGal2|chr3 (21537262-21537405) | |
| 49-169, gnl|hg17|chr2 (43915547-43915698) | |
| 49-169, gnl|Hg17|chr2 (43915570-43915690) | |
| 49-169, gnl|loxAfr1|scaffold_19033 (20315-20165) | |
| 49-169, gnl|mm7|chr17 (82922711-82922858) | |
| 49-169, gnl|Mm7|chr17 (82922730-82922850) | |
| 49-169, gnl|monDom2|scaffold_1 (2387123-2387271) | |
| 49-169, gnl|oryCun1|scaffold_157757 (1065-915) | |
| 49-169, gnl|panTro1|chr12_random (18368331-18368180) | |
| 49-169, gnl|rheMac2|chr13 (43879341-43879492) | |
| 49-169, gnl|rn3|chr6 (7995314-7995462) | |
| 357-548, gnl|bosTau2|chr15 (30791824-30792015) | |
| 357-548, gnl|Hg17|chr2 (43933241-43933432) | |
| 357-548, gnl|Mm7|chr17 (82937313-82937504) | |
| 842-948, gnl|bosTau2|chr15 (30802043-30802148) | |
| 842-948, gnl|Hg17|chr2 (43943429-43943534) | |
| 842-948, gnl|Mm7|chr17 (82943660-82943765) | |
| 1034-1216, gnl|bosTau2|chr15 (30807798-30807980) | |
| 1034-1216, gnl|Hg17|chr2 (43948493-43948678) | |
| 1034-1216, gnl|Mm7|chr17 (82949746-82949920) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| sag (0.548145) | |
| kid (0.518941) | |
| tra (0.369276) | |
| sug (0.254582) | |
| jej (0.197844) | |
| ski (0.146735) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.548145) | |
| kid (0.518941) | |
| tra (0.369276) | |
| sug (0.254582) | |
| jej (0.197844) | |
| ski (0.146735) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| spc (0.113366) | |
| ldo (0.0970026) |