Non-Coding RNA Search

Ss1.1-ruio17_j10.5

Sequence:


               
               CAGTGCTAAAAATCCTGCATAGTTACTGACAAATGTGTGATCTTTTCACAGTCACACCAC
CTGCTGCCCAGAAAGCAGACTATCCACATAGAATGGTGAAGGCAGAACATTACCAACTGT
ATTTCCACTGTTCTTACTTCCTCTGTCCCTTTCATAACTTGGCCTGTTCAGCCTTAATAT
TTCAAAGGCTTGTAGTATAATAGGAACTGAAGATCTATCTCAAAATGTAACGCTTATTTG
ATCCTCTGGAATAATTGAAGTTTTAGGGTAACCTCTACATGTATATAAATTGGGAGATGA
AAAATGTGGTATGAAATTTTCCAAATGTGGTTTAAGCCTAAGTGGCTACTGCTATCTATC
ATTAAGTGACAGTAATATGTTTCAACATCTTTCTGCTTCACCTTTACAATCATATATCTT
AAAATGGAGCTATGAAATTGCTAACCTGATATTCAGGCTTCTGTTGAAATAAGGATATAG
ATACTTTTAACTTGTTGGAAATTTTACAAAGAGAGTAACAATGCAAGTAGCCTCTCTGTA
CCTTTATAAACAATATGTGTTGACCTCCAGCAGTGGGCTGGGCAGACAGCCTTTAGGTGG
TCTCAACCTTAATCATTGATGGAGCACCCAACAAAATTGATGAGAAGTGGAACTCAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGCTAAAAATCCTGCATAGTTACTGACAAATGTGTGATCTTTTCACAGTCACACCAC
CTGCTGCCCAGAAAGCAGACTATCCACATAGAATGGTGAAGGCAGAACATTACCAACTGT
ATTTCCACTGTTCTTACTTCCTCTGTCCCTTTCATAACTTGGCCTGTTCAGCCTTAATAT
TTCAAAGGCTTGTAGTATAATAGGAACTGAAGATCTATCTCAAAATGTAACGCTTATTTG
ATCCTCTGGAATAATTGAAGTTTTAGGGTAACCTCTACATGTATATAAATTGGGAGATGA
AAAATGTGGTATGAAATTTTCCAAATGTGGTTTAAGCCTAAGTGGCTACTGCTATCTATC
ATTAAGTGACAGTAATATGTTTCAACATCTTTCTGCTTCACCTTTACAATCATATATCTT
AAAATGGAGCTATGAAATTGCTAACCTGATATTCAGGCTTCTGTTGAAATAAGGATATAG
ATACTTTTAACTTGTTGGAAATTTTACAAAGAGAGTAACAATGCAAGTAGCCTCTCTGTA
CCTTTATAAACAATATGTGTTGACCTCCAGCAGTGGGCTGGGCAGACAGCCTTTAGGTGG
TCTCAACCTTAATCATTGATGGAGCACCCAACAAAATTGATGAGAAGTGGAACTCAGAAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-631, gnl|bosTau2|chr21 (4294084-4294707)
               

               
               1-631, gnl|Hg17|chr15 (97745583-97746208)
               

               
               1-631, gnl|Mm7|chr7 (63369905-63369301)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-631, gnl|bosTau2|chr21 (4294084-4294707)
               

               
               1-631, gnl|Hg17|chr15 (97745583-97746208)
               

               
               1-631, gnl|Mm7|chr7 (63369905-63369301)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cte (0.29274)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	1-631, gnl\|bosTau2\|chr21 (4294084-4294707)
	1-631, gnl\|Hg17\|chr15 (97745583-97746208)
	1-631, gnl\|Mm7\|chr7 (63369905-63369301)

	cte (0.29274)
	tbr (0.154178)
	bfe (0.149858)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)