Ss1.1-ruio17_j6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTAACATAGAAACATTGCCTTTCCTACACATTCCTCATTGTCGTTTCCCAGAAAATTA TTTTAAGAGTGTATGAGACCAGATTAAATATCCATATTTAATTTGTCTAGTTTTTAAAAA TAAATATTTGAACTCTAGCTTTTTGTGAATTTGGTATACATCAACATTCATGCAAATCAA GGATCAGAAAGAAACTGGGAATTAGCCATCTCCATGTCTCCCTTTGCACATTGGGTACAG TGGTTGGCATTAGTATGCACTAGCTGCAATGTTATAGCACCTTATGGAATTAAGTAGTGT TTATTTATTATTAAGTAAAAAGGTTAAGCTGTATCTCTGTAGAATATCTATTTTACAGAG TGTAAAGCTGTCATATCATTTCCAGCAGGATTTAACTCCTTCATTCTTAATTTTTTTGAA AAAAACCTAAGTAATTTAACATTCCTTTATATTCTCTTAACAGTGTCAAATCTGGGGTAG AATGGATTCACCCCCCCCCCTCCCGCCAAAGGGCTCCATCTTTGTTATCTTTTGGTCGCT CTTTGAAATCCAGTTATGATCAATAGATTTTAACAGTTGATGGCTTCCTATATCAGCACT GGAGTGGTTGGTTGTGATTATTAAAACCTACTACTATTTTCCCTCAGTAACATGTAATTG CTATGTTTTTGATTAGAAGGTATGGCTAGAAAAAATGTGAATGATCACTTAAACCAAAGC CAGTTATAAGGAGTATTCTCTCCTGTTGGTTTACCTTCACCTCAGAACTACAAGAATATT ACAGTACACAGTGAATAGTTGTCTATAACATTTCTACCAGTTGTTTCAGTAGCATTGGTC TTGGCATTTCTTAGCACTATGGTTCTCTATTTTCGGTGATGTCTTATTTTTTGTGAGGGT TTTCTTTTGTTTGTTTTTTTGTTTTTGTTTTTAATAAGTGGGACTATAAATGTAGATGTG TATCAGTACCAAATAGTTCTTTTCTCAAATCCTTGTATTTCTAATTTCTATTCAAGTCTT TTAAACCTGTTTTTTTCTTGCTGAGTAGCAAAGAACCTTTATTTTCCTCGAAACCTAAAA AAGTATGGACACTGCGTTTCAATTAACTGTATTGCATATAGTTTTTTGCCGAAAACTATC TGTAAACACAATTGCCTTGTTCAGTTTTGTTGTAAACTGAATTACCCTAAGATGCACTGT TGATATGCTTTCTGATGTGTTTGTTTGATAAGGGTGATAAAATAAAGCTTAAAAATACAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTAACATAGAAACATTGCCTTTCCTACACATTCCTCATTGTCGTTTCCCAGAAAATTA TTTTAAGAGTGTATGAGACCAGATTAAATATCCATATTTAATTTGTCTAGTTTTTAAAAA TAAATATTTGAACTCTAGCTTTTTGTGAATTTGGTATACATCAACATTCATGCAAATCAA GGATCAGAAAGAAACTGGGAATTAGCCATCTCCATGTCTCCCTTTGCACATTGGGTACAG TGGTTGGCATTAGTATGCACTAGCTGCAATGTTATAGCACCTTATGGAATTAAGTAGTGT TTATTTATTATTAAGTAAAAAGGTTAAGCTGTATCTCTGTAGAATATCTATTTTACAGAG TGTAAAGCTGTCATATCATTTCCAGCAGGATTTAACTCCTTCATTCTTAATTTTTTTGAA AAAAACCTAAGTAATTTAACATTCCTTTATATTCTCTTAACAGTGTCAAATCTGGGGTAG AATGGATTCACCCCCCCCCCTCCCGCCAAAGGGCTCCATCTTTGTTATCTTTTGGTCGCT CTTTGAAATCCAGTTATGATCAATAGATTTTAACAGTTGATGGCTTCCTATATCAGCACT GGAGTGGTTGGTTGTGATTATTAAAACCTACTACTATTTTCCCTCAGTAACATGTAATTG CTATGTTTTTGATTAGAAGGTATGGCTAGAAAAAATGTGAATGATCACTTAAACCAAAGC CAGTTATAAGGAGTATTCTCTCCTGTTGGTTTACCTTCACCTCAGAACTACAAGAATATT ACAGTACACAGTGAATAGTTGTCTATAACATTTCTACCAGTTGTTTCAGTAGCATTGGTC TTGGCATTTCTTAGCACTATGGTTCTCTATTTTCGGTGATGTCTTATTTTTTGTGAGGGT TTTCTTTTGTTTGTTTTTTTGTTTTTGTTTTTAATAAGTGGGACTATAAATGTAGATGTG TATCAGTACCAAATAGTTCTTTTCTCAAATCCTTGTATTTCTAATTTCTATTCAAGTCTT TTAAACCTGTTTTTTTCTTGCTGAGTAGCAAAGAACCTTTATTTTCCTCGAAACCTAAAA AAGTATGGACACTGCGTTTCAATTAACTGTATTGCATATAGTTTTTTGCCGAAAACTATC TGTAAACACAATTGCCTTGTTCAGTTTTGTTGTAAACTGAATTACCCTAAGATGCACTGT TGATATGCTTTCTGATGTGTTTGTTTGATAAGGGTGATAAAATAAAGCTTAAAAATACAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-117, - strand, RNAz p=0.846521 | |
| 281-424, - strand, RNAz p=0.73422 | |
| 305-417, - strand, RNAz p=0.997829 | |
| 650-764, + strand, RNAz p=0.533806 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-117, - strand, RNAz p=0.846521 | |
| 281-424, - strand, RNAz p=0.73422 | |
| 305-417, - strand, RNAz p=0.997829 | |
| 650-764, + strand, RNAz p=0.533806 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-1255, gnl|bosTau2|chr3 (7225591-7226827) | |
| 1-1255, gnl|canFam2|chr38 (23254186-23252554) | |
| 1-1255, gnl|canFam2|chr38 (23252571-23253560) | |
| 1-1255, gnl|dasNov1|scaffold_24309 (9350-10938) | |
| 1-1255, gnl|dasNov1|scaffold_24309 (10918-9969) | |
| 1-1255, gnl|echTel1|scaffold_314191 (42877-44496) | |
| 1-1255, gnl|echTel1|scaffold_314191 (44479-43507) | |
| 1-1255, gnl|hg17|chr1 (159229439-159231079) | |
| 1-1255, gnl|Hg17|chr1 (159229810-159231054) | |
| 1-1255, gnl|hg17|chr2 (185569638-185570620) | |
| 1-1255, gnl|loxAfr1|scaffold_10175 (57284-55679) | |
| 1-1255, gnl|loxAfr1|scaffold_10175 (55695-56679) | |
| 1-1255, gnl|mm7|chr1 (170171417-170169881) | |
| 1-1255, gnl|Mm7|chr1 (170171094-170169904) | |
| 1-1255, gnl|monDom2|scaffold_16 (12293153-12294796) | |
| 1-1255, gnl|monDom2|scaffold_16 (12294777-12293755) | |
| 1-1255, gnl|oryCun1|scaffold_140013 (17859-16869) | |
| 1-1255, gnl|oryCun1|scaffold_145716 (12745-14356) | |
| 1-1255, gnl|panTro1|chr1 (141373594-141375237) | |
| 1-1255, gnl|panTro1|chr13 (75377012-75377999) | |
| 1-1255, gnl|rheMac2|chr1 (141057779-141059419) | |
| 1-1255, gnl|rheMac2|chr12 (48482613-48483594) | |
| 1-1255, gnl|rn3|chr13 (86021972-86020494) | |
| 1-1255, gnl|rn3|chr13 (86020509-86021472) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1255, gnl|bosTau2|chr3 (7225591-7226827) | |
| 1-1255, gnl|canFam2|chr38 (23254186-23252554) | |
| 1-1255, gnl|canFam2|chr38 (23252571-23253560) | |
| 1-1255, gnl|dasNov1|scaffold_24309 (9350-10938) | |
| 1-1255, gnl|dasNov1|scaffold_24309 (10918-9969) | |
| 1-1255, gnl|echTel1|scaffold_314191 (42877-44496) | |
| 1-1255, gnl|echTel1|scaffold_314191 (44479-43507) | |
| 1-1255, gnl|hg17|chr1 (159229439-159231079) | |
| 1-1255, gnl|Hg17|chr1 (159229810-159231054) | |
| 1-1255, gnl|hg17|chr2 (185569638-185570620) | |
| 1-1255, gnl|loxAfr1|scaffold_10175 (57284-55679) | |
| 1-1255, gnl|loxAfr1|scaffold_10175 (55695-56679) | |
| 1-1255, gnl|mm7|chr1 (170171417-170169881) | |
| 1-1255, gnl|Mm7|chr1 (170171094-170169904) | |
| 1-1255, gnl|monDom2|scaffold_16 (12293153-12294796) | |
| 1-1255, gnl|monDom2|scaffold_16 (12294777-12293755) | |
| 1-1255, gnl|oryCun1|scaffold_140013 (17859-16869) | |
| 1-1255, gnl|oryCun1|scaffold_145716 (12745-14356) | |
| 1-1255, gnl|panTro1|chr1 (141373594-141375237) | |
| 1-1255, gnl|panTro1|chr13 (75377012-75377999) | |
| 1-1255, gnl|rheMac2|chr1 (141057779-141059419) | |
| 1-1255, gnl|rheMac2|chr12 (48482613-48483594) | |
| 1-1255, gnl|rn3|chr13 (86021972-86020494) | |
| 1-1255, gnl|rn3|chr13 (86020509-86021472) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| fco (0.78604) | |
| ret (0.643666) | |
| fce (0.271592) | |
| kid (0.259471) | |
| tra (0.246184) | |
| spc (0.226732) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.78604) | |
| ret (0.643666) | |
| fce (0.271592) | |
| kid (0.259471) | |
| tra (0.246184) | |
| spc (0.226732) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| mga (0.160205) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| clu (0.119646) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |