Non-Coding RNA Search

Ss1.1-ruio18_f3.5.5

Sequence:


               
               CTTAATGGGAAAAGGACTGAACAAAATAAAATAATGAAATGTTTAATATGATTTTCTGCC
ACATTAAATACACTGAATGCCTCACAGTTTACAGAATTCTGAAATGTAGTGGGCATAAAA
CCAGAGATTATTTGTATGCTCAAAATAGTTGTATAAATCATTAATGAATTAAATGTCCTG
TTCAGACTAGTTAGGATTTGTTGGCCTTTTTGGATAACACAATTAATTTACTAGTCAATA
CTGATAAGAGAGTACTTTCATTTTCAAGCTGATATTTTGTGATTATTTTCTTTTCCTTAA
GGTCTCATTGAAACAAGATTAATTCGCTCTTTTTCATGATTCACAAATGATCAATACCAA
AAAATCTTTCAGGTCCTGCTGTGAAATGTGTTTTGATTTTTGTGTGTGTAAGTTGATTTT
GATCAGAGTCATAATCCTGTTCAATCTTTTAATTTTTTCTCCAGTTATGTGAAGTGATCC
AAAATATTAATATTTCCGTAAATTTCTATATTAACATTTTTAAGTGACAAATATTGTTCA
CTAACATTAAACTTTTTTATATATGAAGACTAACTCGTGAATAAACTTCAAAGTTCATTT
TCTTATATAAGTAGCAGGAGCTTTTAACGTAAAATTTAATTTTAATTGCATTGATATTTT
ACATATACTGGTTTGATAATACAGCTCTAAGACATGCAGCATATATATGTTGGTAAGAGA
TTACTAGAGAAATATGTGTGTGTACATATATATATTTTGCACCTGCATTAACCAGGTTTT
CTTAAATGGTATGTACGCAGTCAGCCCTCCATATCTCATGGAAGCCTATTTGATGATTCC
ACTTTCATAGATTCAATCAACTGCAGATTACAGATACTGGAAAAAAATTCCAGAGAGTTC
CAAAAAGAAAAACCTAAATTTGCTAAATGCCAGCAACTAGTTACCCAGCATTTACACTGT
ATATTAGGTATAAGTAATCTAGAGATGATTTAAAGTACATAGGAGGATGTATATAGGTTA
TATGCAAACACTTAACCATTTTATATAAAAGACTAGAGCACTTGAAGATTTTGATATTCT
TAAGGGTTCCTGGAACCAATCTCCTGGATACTGAGGGACGACTGCAACTGATCAGTTAGC
CAACTATCAAGTAATTATTGTGCCCCCACTATTTATATAACACTTTTCAGTTTGTAGCTG
ATACATGAAGATTTCTTTTAGAAATATTCATTTTGGATGTGCATATCACTTTTCAATTGA
CTTCTTACAACTACTTATAGCCAAATACTGGCTATAGCTCTCAAGCCATGTTGATACTAT
ACTCTTAGCTTCATATTACACACTGTAATTTTTGATGCTCTAGCGCTAAATAATTTAGAA
TATGCCTATGAAATATCTTTAGTAGAAAGCAACACAAAGCTAATATTCAACATAGAGTAT
TTTCATGTTTTTTTAATAGCCTCCTTCAAATTGGCAATGTTTGGTTAATGCTTAGGTAAC
TTGGAAGTAGCTATGCTTCAGACTTATTTTTGTCTGAATTTTTGGTAGTCCACCAATTCT
GCTGTTAACAATTAAATTCAGAAGTCTTCTTCCTTCCACTGTAGTGCCAGTGAGCAACAC
TGCTGTGTAACAAAAACTGCTGTTACTTTATCTCGCTGTGAATTAGTTTAAATCTCCCTT
CTACCATTGATTAAAACATACATGTTGGTTAAGAGTGAGACTCCCAGTGTGTTTAGAATT
TTTTAAATGAATCATCAACAGGTGGAACTATGAAATACATTCTTCTACAAAAGAAATTGT
CTCCTTTTATATTTTGATGATTGTTTTCTTATATGAAGATTAAGATATGTTCTTGCTCTT
TTGTGAGATTACTTAAATCATGTTTCCCCTTTTGATTTATTCTCTAGGTTATCTGATTTA
CATGAAATTTGGCACTTTAGAGTGTTCTTTTTCTCACAAAATATATTTAATAAAAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAATGGGAAAAGGACTGAACAAAATAAAATAATGAAATGTTTAATATGATTTTCTGCC
ACATTAAATACACTGAATGCCTCACAGTTTACAGAATTCTGAAATGTAGTGGGCATAAAA
CCAGAGATTATTTGTATGCTCAAAATAGTTGTATAAATCATTAATGAATTAAATGTCCTG
TTCAGACTAGTTAGGATTTGTTGGCCTTTTTGGATAACACAATTAATTTACTAGTCAATA
CTGATAAGAGAGTACTTTCATTTTCAAGCTGATATTTTGTGATTATTTTCTTTTCCTTAA
GGTCTCATTGAAACAAGATTAATTCGCTCTTTTTCATGATTCACAAATGATCAATACCAA
AAAATCTTTCAGGTCCTGCTGTGAAATGTGTTTTGATTTTTGTGTGTGTAAGTTGATTTT
GATCAGAGTCATAATCCTGTTCAATCTTTTAATTTTTTCTCCAGTTATGTGAAGTGATCC
AAAATATTAATATTTCCGTAAATTTCTATATTAACATTTTTAAGTGACAAATATTGTTCA
CTAACATTAAACTTTTTTATATATGAAGACTAACTCGTGAATAAACTTCAAAGTTCATTT
TCTTATATAAGTAGCAGGAGCTTTTAACGTAAAATTTAATTTTAATTGCATTGATATTTT
ACATATACTGGTTTGATAATACAGCTCTAAGACATGCAGCATATATATGTTGGTAAGAGA
TTACTAGAGAAATATGTGTGTGTACATATATATATTTTGCACCTGCATTAACCAGGTTTT
CTTAAATGGTATGTACGCAGTCAGCCCTCCATATCTCATGGAAGCCTATTTGATGATTCC
ACTTTCATAGATTCAATCAACTGCAGATTACAGATACTGGAAAAAAATTCCAGAGAGTTC
CAAAAAGAAAAACCTAAATTTGCTAAATGCCAGCAACTAGTTACCCAGCATTTACACTGT
ATATTAGGTATAAGTAATCTAGAGATGATTTAAAGTACATAGGAGGATGTATATAGGTTA
TATGCAAACACTTAACCATTTTATATAAAAGACTAGAGCACTTGAAGATTTTGATATTCT
TAAGGGTTCCTGGAACCAATCTCCTGGATACTGAGGGACGACTGCAACTGATCAGTTAGC
CAACTATCAAGTAATTATTGTGCCCCCACTATTTATATAACACTTTTCAGTTTGTAGCTG
ATACATGAAGATTTCTTTTAGAAATATTCATTTTGGATGTGCATATCACTTTTCAATTGA
CTTCTTACAACTACTTATAGCCAAATACTGGCTATAGCTCTCAAGCCATGTTGATACTAT
ACTCTTAGCTTCATATTACACACTGTAATTTTTGATGCTCTAGCGCTAAATAATTTAGAA
TATGCCTATGAAATATCTTTAGTAGAAAGCAACACAAAGCTAATATTCAACATAGAGTAT
TTTCATGTTTTTTTAATAGCCTCCTTCAAATTGGCAATGTTTGGTTAATGCTTAGGTAAC
TTGGAAGTAGCTATGCTTCAGACTTATTTTTGTCTGAATTTTTGGTAGTCCACCAATTCT
GCTGTTAACAATTAAATTCAGAAGTCTTCTTCCTTCCACTGTAGTGCCAGTGAGCAACAC
TGCTGTGTAACAAAAACTGCTGTTACTTTATCTCGCTGTGAATTAGTTTAAATCTCCCTT
CTACCATTGATTAAAACATACATGTTGGTTAAGAGTGAGACTCCCAGTGTGTTTAGAATT
TTTTAAATGAATCATCAACAGGTGGAACTATGAAATACATTCTTCTACAAAAGAAATTGT
CTCCTTTTATATTTTGATGATTGTTTTCTTATATGAAGATTAAGATATGTTCTTGCTCTT
TTGTGAGATTACTTAAATCATGTTTCCCCTTTTGATTTATTCTCTAGGTTATCTGATTTA
CATGAAATTTGGCACTTTAGAGTGTTCTTTTTCTCACAAAATATATTTAATAAAAATTCT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               838-1104, gnl|bosTau2|chr9 (43532755-43533025)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               838-1104, gnl|bosTau2|chr9 (43532755-43533025)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               lin (2.03844)
               

               
               sin (1.04969)
               

               
               rec (1.03842)
               

               
               tra (0.861645)
               

               
               kid (0.648677)
               

               
               col (0.390016)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (2.03844)
               

               
               sin (1.04969)
               

               
               rec (1.03842)
               

               
               tra (0.861645)
               

               
               kid (0.648677)
               

               
               col (0.390016)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	lin (2.03844)
	sin (1.04969)
	rec (1.03842)
	tra (0.861645)
	kid (0.648677)
	col (0.390016)
	duo (0.172801)
	nje (0.16592)
	ret (0.128733)
	bla (0.124347)
	cty (0.10408)