Non-Coding RNA Search

Ss1.1-ruio18_l20.5

Sequence:


               
               CAAACACCAAACAACACTGTCACTTACGAAAGTGAACGAGGAGGTTTTAGGCGTACATTT
TCACGTTCTGAGCGAGCAGGTGTGAGAACCTATGTCAGTACCATCAGAATTCCAATTCGT
AGAATATTGAATACTGGTTTAAGTGAGACTACATCTGTTGCAATTCAGACCATGTTAAGG
CAGATAATGACAGGTTTTGGTGAGTTAAGCTACTTTATGTACAGTGACAGTGATTCAGAG
CCTAGTGGCTCAGTCTCGAGTCGAAATATGGAAAGGGCAGAGTCACGGAACGGAAGAGTG
GGTTCTGGTGGTAGTAGCAGTTCTGGTTCCAGTTCGAGTTCCAGTTCAAGTTCCAGTTCC
AGTTCTAGTTCAAGTTCCAGTCCTAGTTCCAGTTCCAGTGGTGAAAGTTCAGAGACTAGC
TCAGAGGTGTTTGAAGGCAGTAATGAAGGAAGCTCATCATCAGGCTCATCAGGTGCCAGG
CGAGAGGGTCGACACAGGGCCCCGGTAACATTTGATGAAAGTGGCTCTTTGCCCTTCCTT
AGTCTGGCTCAGTTCTTCCTCTTAAATGAGGATGATGATGACCAACCTAGAGGACTCACC
AAAGAACAGATTGACAACTTGGCAATGAGAAGTTTTGGTGAAAACGATGCATTAAAAACC
TGTAGTGTTTGCATTACAGAGTATACAGAAGGCAACAAACTTCGTAAACTACCGTGTTCC
CATGAGTACCATGTCCACTGCATCGATCGCTGGCTATCTGAGAATTCTACTTGTCCTATT
TGTCGCAGAGCAGTCTTAGCTTCTGGTAACAGAGAAAGCATTGTGTGATTAAGGTCTGAA
CTCTCAGCTATTTAGCTGGTATAGTGATGGGCAAACAGGAATCACTTGCTTTATATCCAC
TTTTTGAGTGGTGCTTAAATGTAAAGTAGCAACCTGAATTGAGTCATTGCTTTCTGAATG
AATCATTGTCCTTTCTCTAATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACACCAAACAACACTGTCACTTACGAAAGTGAACGAGGAGGTTTTAGGCGTACATTT
TCACGTTCTGAGCGAGCAGGTGTGAGAACCTATGTCAGTACCATCAGAATTCCAATTCGT
AGAATATTGAATACTGGTTTAAGTGAGACTACATCTGTTGCAATTCAGACCATGTTAAGG
CAGATAATGACAGGTTTTGGTGAGTTAAGCTACTTTATGTACAGTGACAGTGATTCAGAG
CCTAGTGGCTCAGTCTCGAGTCGAAATATGGAAAGGGCAGAGTCACGGAACGGAAGAGTG
GGTTCTGGTGGTAGTAGCAGTTCTGGTTCCAGTTCGAGTTCCAGTTCAAGTTCCAGTTCC
AGTTCTAGTTCAAGTTCCAGTCCTAGTTCCAGTTCCAGTGGTGAAAGTTCAGAGACTAGC
TCAGAGGTGTTTGAAGGCAGTAATGAAGGAAGCTCATCATCAGGCTCATCAGGTGCCAGG
CGAGAGGGTCGACACAGGGCCCCGGTAACATTTGATGAAAGTGGCTCTTTGCCCTTCCTT
AGTCTGGCTCAGTTCTTCCTCTTAAATGAGGATGATGATGACCAACCTAGAGGACTCACC
AAAGAACAGATTGACAACTTGGCAATGAGAAGTTTTGGTGAAAACGATGCATTAAAAACC
TGTAGTGTTTGCATTACAGAGTATACAGAAGGCAACAAACTTCGTAAACTACCGTGTTCC
CATGAGTACCATGTCCACTGCATCGATCGCTGGCTATCTGAGAATTCTACTTGTCCTATT
TGTCGCAGAGCAGTCTTAGCTTCTGGTAACAGAGAAAGCATTGTGTGATTAAGGTCTGAA
CTCTCAGCTATTTAGCTGGTATAGTGATGGGCAAACAGGAATCACTTGCTTTATATCCAC
TTTTTGAGTGGTGCTTAAATGTAAAGTAGCAACCTGAATTGAGTCATTGCTTTCTGAATG
AATCATTGTCCTTTCTCTAATTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5360113|gb|AAD42875.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5360113|gb|AAD42875.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               816-928, + strand, RNAz p=0.629002

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               816-928, + strand, RNAz p=0.629002

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               338-984, gnl|bosTau2|chrX (21710826-21711472)
               

               
               338-984, gnl|Hg17|chrX (73594828-73594139)
               

               
               338-984, gnl|Mm7|chrX (99290331-99289692)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               338-984, gnl|bosTau2|chrX (21710826-21711472)
               

               
               338-984, gnl|Hg17|chrX (73594828-73594139)
               

               
               338-984, gnl|Mm7|chrX (99290331-99289692)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	338-984, gnl\|bosTau2\|chrX (21710826-21711472)
	338-984, gnl\|Hg17\|chrX (73594828-73594139)
	338-984, gnl\|Mm7\|chrX (99290331-99289692)

	tes (0.207814)
	sto (0.179824)
	rec (0.17307)
	fco (0.157208)
	kid (0.129735)
	ecc (0.115035)