Non-Coding RNA Search

Ss1.1-ruio18_l5.5

Sequence:


               
               TTGAATTCAACTGTCTTTAGCTCTAGAGCCTTAGATGAGTTTGATCTCGGTACAATCTTA
ACCACTGATAATCCAGATTTGTTCATTAACAGCATTGGGCTTGTGTCCTCTGTAGAAGAA
AATAATAATCCTCAACCAAAAGTGGAGAGGGCACACGTTTGGAAGGTCTTTTCAGCAGGA
CCTCTTACTAAAGAACAAATTTTAAAGCTCTTTGTGTCCTATGATTATGCTGTGAAGCAG
TCATGGCTTGCATACCCTCATTATACGCCTCCAGAGAAATGCCCCTCCATCATACTTCAC
GATCAACTTTACTACCTCAACGGCATCGAGTTTGCAGCAAGTGCCATGGAAATGAGTGCC
GTTGCAGGTTACAATGCTGCTCTTCTTGCCTATCACCGCTGGAATGGACATACACACATG
ATTGATCAAGAGGACTTATATGAGAAACTTAAAACTGAGCTATGAAATGCAGTTATCTTT
TTTTCCCCCCTCTCCTGGTTCCAAGTGGAATATCACTGGCAAAAATAAGAACATAACCTG
AGCAGATCATTTTGAATCAGTATATTTTGCCATTATCATTAACAAAAGTAATCCCAGTGA
GACATAAGAAAATGCAAGGTTCTAATTAAGCGTGAAGGCGTAATTATTCCATCTCCAATA
TTTCTTAACTCCTTTTTAATATCCATCAGCAGTGTTTTGCAAACTTGTCTGATCATAAGA
ATCATCTGAAGTTTATTAAACATGGATTCTGTAGCTCCTCTGGAGATTCTGATTTAATAG
GTCTGGGTTGGGGCCCTTGGGTTTTGATTAAAACCTTGGAGCATTATAAGCTGAGCACTT
GAAGACATCTTTTTGTTGGGGCTAGTTCATTTGTGCTTCACAGCTGGATGTGATCTGCAG
TCAGATAAAACTATGGGAGCTGGTACCTTATACCTGCCTTTAGTAATTTTATATTTTTCA
AAGTAAATAAGCCCAGGCCTGAAGCCTTGATTTTCAGAATGTTCTTTTGATTGCTTCTGT
TCCCATTTGTATTAGGGCTGAAATTCAGAAGTCTAAGTAGTATAAACTTAAGATGTCATA
CAAAAATTTCAAGTAAAATGAAAAGCAGACTATTGATTTAAGGGAAATTGACGTTCCGTT
TTCAAACCCTCATATGAGGAACTTTTAAAAATGCTGATAAAATACTGATAGAGCCCCACA
ACAGAAATTCTGATTTAATGGATTGAGGATAGGAACTCAGCTTTTTGTAGCTTTTCCTAA
TGTGCAGCCTGGGTTGAGAATCACTGATTTGGGGGTATATGAAGTCTCCAAAGGGTTTTC
AGTGCCTTAAAGATCCCAAGAAACCCAATCCATTATCAAAGCAGATCCATATTGCAAAGC
ATTTTCTCTCTCGAAAACTCTAGTATTAATCGATAGTAAAAGTATTGACAGTCTAGAGGC
AACCACATTTACAGAACGATTTCTACAATTCAGCTCTACATAGTTGCAAAAAACATGAGC
TTGCCAAAGTTGGTAATTTAAAAAGAGCTACTGGAGGAAAATGAATAAAAATGTATTCAC
GTCAACTCTAGTTAATTTGATCTCTCCTGCTACTCTTTTGCTGTAAACATTTCCTAGGAA
TAGGAAATAACATTCTGCCATCCATTTTGTTCTATTTTACAAGTACCTCATGTATACATT
GTTTGTACACCCTGTTCTCCACACTTCTAGAGAAAATACAACTTGTAGGCATTTTACCAG
ACCACAAAAATAAGCTTTAGCATTTGCCTGATAGGTTCCTTAAAGTTAGGTCTATGATAT
GATCACCTGTTCGCTCTCATATAAATTTGTGCACCACAAAATTTATGAACGAGGTGAATA
TATTATGTATGGGCAGCATTATCACTATCCTCTACTCCACAAAGACCACAATCATTGCAA
TGTTTTTTTCCAAAATTACATTTCTACTCTTGTATTCAAAAATGTGCCTCACTTCTGTTC
AAAATAAAACAATGACATTATTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAATTCAACTGTCTTTAGCTCTAGAGCCTTAGATGAGTTTGATCTCGGTACAATCTTA
ACCACTGATAATCCAGATTTGTTCATTAACAGCATTGGGCTTGTGTCCTCTGTAGAAGAA
AATAATAATCCTCAACCAAAAGTGGAGAGGGCACACGTTTGGAAGGTCTTTTCAGCAGGA
CCTCTTACTAAAGAACAAATTTTAAAGCTCTTTGTGTCCTATGATTATGCTGTGAAGCAG
TCATGGCTTGCATACCCTCATTATACGCCTCCAGAGAAATGCCCCTCCATCATACTTCAC
GATCAACTTTACTACCTCAACGGCATCGAGTTTGCAGCAAGTGCCATGGAAATGAGTGCC
GTTGCAGGTTACAATGCTGCTCTTCTTGCCTATCACCGCTGGAATGGACATACACACATG
ATTGATCAAGAGGACTTATATGAGAAACTTAAAACTGAGCTATGAAATGCAGTTATCTTT
TTTTCCCCCCTCTCCTGGTTCCAAGTGGAATATCACTGGCAAAAATAAGAACATAACCTG
AGCAGATCATTTTGAATCAGTATATTTTGCCATTATCATTAACAAAAGTAATCCCAGTGA
GACATAAGAAAATGCAAGGTTCTAATTAAGCGTGAAGGCGTAATTATTCCATCTCCAATA
TTTCTTAACTCCTTTTTAATATCCATCAGCAGTGTTTTGCAAACTTGTCTGATCATAAGA
ATCATCTGAAGTTTATTAAACATGGATTCTGTAGCTCCTCTGGAGATTCTGATTTAATAG
GTCTGGGTTGGGGCCCTTGGGTTTTGATTAAAACCTTGGAGCATTATAAGCTGAGCACTT
GAAGACATCTTTTTGTTGGGGCTAGTTCATTTGTGCTTCACAGCTGGATGTGATCTGCAG
TCAGATAAAACTATGGGAGCTGGTACCTTATACCTGCCTTTAGTAATTTTATATTTTTCA
AAGTAAATAAGCCCAGGCCTGAAGCCTTGATTTTCAGAATGTTCTTTTGATTGCTTCTGT
TCCCATTTGTATTAGGGCTGAAATTCAGAAGTCTAAGTAGTATAAACTTAAGATGTCATA
CAAAAATTTCAAGTAAAATGAAAAGCAGACTATTGATTTAAGGGAAATTGACGTTCCGTT
TTCAAACCCTCATATGAGGAACTTTTAAAAATGCTGATAAAATACTGATAGAGCCCCACA
ACAGAAATTCTGATTTAATGGATTGAGGATAGGAACTCAGCTTTTTGTAGCTTTTCCTAA
TGTGCAGCCTGGGTTGAGAATCACTGATTTGGGGGTATATGAAGTCTCCAAAGGGTTTTC
AGTGCCTTAAAGATCCCAAGAAACCCAATCCATTATCAAAGCAGATCCATATTGCAAAGC
ATTTTCTCTCTCGAAAACTCTAGTATTAATCGATAGTAAAAGTATTGACAGTCTAGAGGC
AACCACATTTACAGAACGATTTCTACAATTCAGCTCTACATAGTTGCAAAAAACATGAGC
TTGCCAAAGTTGGTAATTTAAAAAGAGCTACTGGAGGAAAATGAATAAAAATGTATTCAC
GTCAACTCTAGTTAATTTGATCTCTCCTGCTACTCTTTTGCTGTAAACATTTCCTAGGAA
TAGGAAATAACATTCTGCCATCCATTTTGTTCTATTTTACAAGTACCTCATGTATACATT
GTTTGTACACCCTGTTCTCCACACTTCTAGAGAAAATACAACTTGTAGGCATTTTACCAG
ACCACAAAAATAAGCTTTAGCATTTGCCTGATAGGTTCCTTAAAGTTAGGTCTATGATAT
GATCACCTGTTCGCTCTCATATAAATTTGTGCACCACAAAATTTATGAACGAGGTGAATA
TATTATGTATGGGCAGCATTATCACTATCCTCTACTCCACAAAGACCACAATCATTGCAA
TGTTTTTTTCCAAAATTACATTTCTACTCTTGTATTCAAAAATGTGCCTCACTTCTGTTC
AAAATAAAACAATGACATTATTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1607-1702, + strand, RNAz p=0.966281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1607-1702, + strand, RNAz p=0.966281

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-1434, gnl|bosTau2|chr11 (49574676-49576124)
               

               
               1-1434, gnl|Hg17|chr2 (70415711-70417291)
               


               
               1544-2003, gnl|bosTau2|chr11 (49577296-49577735)
               

               
               1544-2003, gnl|Hg17|chr2 (70419459-70419968)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1434, gnl|bosTau2|chr11 (49574676-49576124)
               

               
               1-1434, gnl|Hg17|chr2 (70415711-70417291)
               


               
               1544-2003, gnl|bosTau2|chr11 (49577296-49577735)
               

               
               1544-2003, gnl|Hg17|chr2 (70419459-70419968)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               fat (1.17942)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               cty (0.5204)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.17942)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               cty (0.5204)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               lyg (0.399308)
               

               
               bla (0.373042)
               

               
               sag (0.36543)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1-1434, gnl\|bosTau2\|chr11 (49574676-49576124)
	1-1434, gnl\|Hg17\|chr2 (70415711-70417291)

	1544-2003, gnl\|bosTau2\|chr11 (49577296-49577735)
	1544-2003, gnl\|Hg17\|chr2 (70419459-70419968)

	fat (1.17942)
	sme (0.610874)
	lin (0.582411)
	cty (0.5204)
	pro (0.512033)
	tra (0.492368)
	ski (0.440205)
	amn (0.417711)
	lyg (0.399308)
	bla (0.373042)
	sag (0.36543)
	ret (0.257467)
	mgp (0.230681)
	ece (0.229305)
	tes (0.207814)
	hea (0.204499)
	rec (0.17307)
	nje (0.16592)
	nco (0.161734)
	isp (0.150376)
	liv (0.146284)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)
	jca (0.11396)