Non-Coding RNA Search

Ss1.1-ruio18_n7.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAAGAAGAAGACCTTTTGTTCAAGTGATTTGGTTAATGAGTAAC
CAGAATCACGAAGTGCATGACATTTTAAATGGTAGTCTTACTTAGACCGAATCCCCCCAA
TCAATACTCTTATTACGTTCAGTATGCTTGTGTCCTTCTGAATGCTGTATATTCAGCGAT
AGAAGGTGGTTTAATTGACTTACAGCTTTGTTTTGCTTTGTATTTTTCTAGTGTTTTTTA
GCTTTCACTTAATTAGGTTTAAAGTCTTGTTTGTGAGTATAGTTTTTGTATGACAAATGA
TTCTTGCTTATTAGCTTTTGTTTAAAGAATGCGTAGCAAGAGCTAAGCTTTTAAAAATGA
ATGCATTTACCATTAATAAAGCCTGTGATATTATATAATGCTTTTCTCTGATCTTTTGAA
AATGTTCTTTATAGATGTATACATGAATTTTGATTCTTGCAGCATTTGAAAACAAATCTC
ATATATCAAATCTTTTATTATTGGGAAGGAAATTATCACGTCTTTGAGAAACAAGAAAAA
ACATCTCCAATTCTATATAAGACGTAGGTGCCTGCATCTAGAAGGAAGGCTCTCATTGCA
GTTGTTTACATTTAAGGTACCTCTATATCTCTAGGGCCAAAGAAGCTTTTCCTATTATAA
CACCTCGTATTCTTTCAGGATGAAGAGATATTGTGAAAGTAGTCTGAATAGCATAAACTT
GATAGAAAACAGATCAACTAGTCATGAAGATTCAACTTCTATAAAAAGTTTATTACACTT
CCCAACTCAGATGTAGATTTCATTTTCAAGAGGTATACATTTTAAAACAATGATTTATTT
GACTTTGTTAGCATTTTGTGACTAAGTCAGTAATTGAAGGGTTTGGGGGTTGTTTTATTT
TTTAGGTTAATAGAAGCACTTGTGAAGTTACTGAAAAATGGTCTTGTGTTAGTTCAAAAA
ATTACGTATGTATATCTCCTATGTTTAAGAGGGAAACCGTCTGAAACAAAAATCTTTTAA
AATTGTTTATTTGAAAAAAGCATATGTATTCCAACTTTAAAATTGTGAATTTATTTTTGG
ATAACCTCTACCTGTATTTTGGGGAGTTATTTCTGTTGCTGTATAATTAGGTATTTCATG
GCAATATTTTTTATTAAATTGAAACTCTGTATAGGTTTTGAAAATAAAGCCATTTTAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAGAAGAAGACCTTTTGTTCAAGTGATTTGGTTAATGAGTAAC
CAGAATCACGAAGTGCATGACATTTTAAATGGTAGTCTTACTTAGACCGAATCCCCCCAA
TCAATACTCTTATTACGTTCAGTATGCTTGTGTCCTTCTGAATGCTGTATATTCAGCGAT
AGAAGGTGGTTTAATTGACTTACAGCTTTGTTTTGCTTTGTATTTTTCTAGTGTTTTTTA
GCTTTCACTTAATTAGGTTTAAAGTCTTGTTTGTGAGTATAGTTTTTGTATGACAAATGA
TTCTTGCTTATTAGCTTTTGTTTAAAGAATGCGTAGCAAGAGCTAAGCTTTTAAAAATGA
ATGCATTTACCATTAATAAAGCCTGTGATATTATATAATGCTTTTCTCTGATCTTTTGAA
AATGTTCTTTATAGATGTATACATGAATTTTGATTCTTGCAGCATTTGAAAACAAATCTC
ATATATCAAATCTTTTATTATTGGGAAGGAAATTATCACGTCTTTGAGAAACAAGAAAAA
ACATCTCCAATTCTATATAAGACGTAGGTGCCTGCATCTAGAAGGAAGGCTCTCATTGCA
GTTGTTTACATTTAAGGTACCTCTATATCTCTAGGGCCAAAGAAGCTTTTCCTATTATAA
CACCTCGTATTCTTTCAGGATGAAGAGATATTGTGAAAGTAGTCTGAATAGCATAAACTT
GATAGAAAACAGATCAACTAGTCATGAAGATTCAACTTCTATAAAAAGTTTATTACACTT
CCCAACTCAGATGTAGATTTCATTTTCAAGAGGTATACATTTTAAAACAATGATTTATTT
GACTTTGTTAGCATTTTGTGACTAAGTCAGTAATTGAAGGGTTTGGGGGTTGTTTTATTT
TTTAGGTTAATAGAAGCACTTGTGAAGTTACTGAAAAATGGTCTTGTGTTAGTTCAAAAA
ATTACGTATGTATATCTCCTATGTTTAAGAGGGAAACCGTCTGAAACAAAAATCTTTTAA
AATTGTTTATTTGAAAAAAGCATATGTATTCCAACTTTAAAATTGTGAATTTATTTTTGG
ATAACCTCTACCTGTATTTTGGGGAGTTATTTCTGTTGCTGTATAATTAGGTATTTCATG
GCAATATTTTTTATTAAATTGAAACTCTGTATAGGTTTTGAAAATAAAGCCATTTTAGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               14-1200, gnl|bosTau2|chr24 (24737873-24736679)
               

               
               14-1200, gnl|Hg17|chr18 (17703745-17704910)
               

               
               14-1200, gnl|Mm7|chr18 (11023910-11025124)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1200, gnl|bosTau2|chr24 (24737873-24736679)
               

               
               14-1200, gnl|Hg17|chr18 (17703745-17704910)
               

               
               14-1200, gnl|Mm7|chr18 (11023910-11025124)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               lin (0.582411)
               

               
               ret (0.514933)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               ret (0.514933)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	14-1200, gnl\|bosTau2\|chr24 (24737873-24736679)
	14-1200, gnl\|Hg17\|chr18 (17703745-17704910)
	14-1200, gnl\|Mm7\|chr18 (11023910-11025124)

	lin (0.582411)
	ret (0.514933)
	eye (0.341006)
	fce (0.271592)
	kid (0.259471)
	fbs (0.175346)
	tbr (0.154178)
	lun (0.150489)
	pty (0.142714)
	ese (0.126502)
	bla (0.124347)
	ebs (0.118301)
	cty (0.10408)