Non-Coding RNA Search

Ss1.1-ruio19_e9.5

Sequence:


               
               CCATTTTATAGCATCCTTACCAATTTGCAGTACTTTGGGAGCAATATTTTCCTGTTCCAG
GTAATCTTTGGAGCTCTCACTGCCTCAGCCAGGTATTGTGCACTTCTAGTTATGAATCAT
ATGGATCATCGACGAACCCAGATGCTTTTCTTATCCCTGGTGGGACTTTCTATTTTGGTC
AACACGTTTGTGCCCCAAGAAATGCAGACCCTGCGTGTGACTTTGGCAAGTGTGGGAATT
AGCTTCGTTGCTGCCTCTGCCACTAGCTTTTCTGTCCAGTTGGTTGAACTCGTCCCAACT
ATTGTCAGGGCAAAAGCTTTGGGAGTAGATAATGTGGCTTCCAGATGTGGGGCAACATTG
GCTCCCCTCTTGATGACCGTAGCGGTGTATCTACCCACCTTGCCCTGGATCATCTATGCA
GTAAGTCCCATCCTTGGTGGTCTTGTCGTCTTCTTCCTACCTGAAACCAGAAATTTGCCT
CTGCCGGACACCATCCAGGATGTGGAAAATGACAACAAATTCTCAAGAAAAGCAAATGAA
AAAGATTACTGCATAAAAGTGACAAAATTTTAAGGAGATTTTATGAGCTTACAAGTGAGG
AAAAGAAAAATATGAAGAGAACAACTGGAGATTTCTTTGTATCTACAAACTAGCAAGAAA
ATATAACGGAAAGATGAATCGCATTTATAATTATACCATTAATTTGTACATGGGAACATG
TAATTCCTTTACAGTTCAATATTTTGGGGAAGAAGTTGAACAAATCAAATTATGAATAAA
TTATTAATAGATAAGATTATTCAGAAAAAAAGGAATACCTTTCAATTAAGATGTGGCTGA
CAGATATATGCAGCAGCATATAGTGAACTATAAATAAATCTACAAAAACCAGAACAGTAT
AGCATATGCAACTGGAAATGAAAAGAAGTGCAGAAACAGATATCAAAGCATATACACTTC
ATACATGATTCTTTCACACCATAAATCGCTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATTTTATAGCATCCTTACCAATTTGCAGTACTTTGGGAGCAATATTTTCCTGTTCCAG
GTAATCTTTGGAGCTCTCACTGCCTCAGCCAGGTATTGTGCACTTCTAGTTATGAATCAT
ATGGATCATCGACGAACCCAGATGCTTTTCTTATCCCTGGTGGGACTTTCTATTTTGGTC
AACACGTTTGTGCCCCAAGAAATGCAGACCCTGCGTGTGACTTTGGCAAGTGTGGGAATT
AGCTTCGTTGCTGCCTCTGCCACTAGCTTTTCTGTCCAGTTGGTTGAACTCGTCCCAACT
ATTGTCAGGGCAAAAGCTTTGGGAGTAGATAATGTGGCTTCCAGATGTGGGGCAACATTG
GCTCCCCTCTTGATGACCGTAGCGGTGTATCTACCCACCTTGCCCTGGATCATCTATGCA
GTAAGTCCCATCCTTGGTGGTCTTGTCGTCTTCTTCCTACCTGAAACCAGAAATTTGCCT
CTGCCGGACACCATCCAGGATGTGGAAAATGACAACAAATTCTCAAGAAAAGCAAATGAA
AAAGATTACTGCATAAAAGTGACAAAATTTTAAGGAGATTTTATGAGCTTACAAGTGAGG
AAAAGAAAAATATGAAGAGAACAACTGGAGATTTCTTTGTATCTACAAACTAGCAAGAAA
ATATAACGGAAAGATGAATCGCATTTATAATTATACCATTAATTTGTACATGGGAACATG
TAATTCCTTTACAGTTCAATATTTTGGGGAAGAAGTTGAACAAATCAAATTATGAATAAA
TTATTAATAGATAAGATTATTCAGAAAAAAAGGAATACCTTTCAATTAAGATGTGGCTGA
CAGATATATGCAGCAGCATATAGTGAACTATAAATAAATCTACAAAAACCAGAACAGTAT
AGCATATGCAACTGGAAATGAAAAGAAGTGCAGAAACAGATATCAAAGCATATACACTTC
ATACATGATTCTTTCACACCATAAATCGCTGGCAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61885437|ref|XP_599904.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885437|ref|XP_599904.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               5-199, gnl|bosTau2|chr29 (32546580-32546774)
               

               
               5-199, gnl|Hg17|chr11 (62826397-62826591)
               

               
               5-199, gnl|Mm7|chr19 (7502816-7502620)
               


               
               307-510, gnl|bosTau2|chr29 (32549619-32549822)
               

               
               307-510, gnl|Hg17|chr11 (62828732-62828935)
               

               
               307-510, gnl|Mm7|chr19 (7494309-7494106)
               


               
               513-706, gnl|bosTau2|chr29 (32552136-32552329)
               

               
               513-706, gnl|Hg17|chr11 (62835055-62835258)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-199, gnl|bosTau2|chr29 (32546580-32546774)
               

               
               5-199, gnl|Hg17|chr11 (62826397-62826591)
               

               
               5-199, gnl|Mm7|chr19 (7502816-7502620)
               


               
               307-510, gnl|bosTau2|chr29 (32549619-32549822)
               

               
               307-510, gnl|Hg17|chr11 (62828732-62828935)
               

               
               307-510, gnl|Mm7|chr19 (7494309-7494106)
               


               
               513-706, gnl|bosTau2|chr29 (32552136-32552329)
               

               
               513-706, gnl|Hg17|chr11 (62835055-62835258)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.259471)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)

	5-199, gnl\|bosTau2\|chr29 (32546580-32546774)
	5-199, gnl\|Hg17\|chr11 (62826397-62826591)
	5-199, gnl\|Mm7\|chr19 (7502816-7502620)

	307-510, gnl\|bosTau2\|chr29 (32549619-32549822)
	307-510, gnl\|Hg17\|chr11 (62828732-62828935)
	307-510, gnl\|Mm7\|chr19 (7494309-7494106)

	513-706, gnl\|bosTau2\|chr29 (32552136-32552329)
	513-706, gnl\|Hg17\|chr11 (62835055-62835258)