Non-Coding RNA Search

Ss1.1-ruio19_j15.5

Sequence:


               
               AAAAAAAAAAAAAGGTACTTGCAGTCAGTGCTCTCAAGCTTGAATTTTTCTAGATTACAT
GAATATTTAGAATTTTAAATTTAAAAAAGAAAACAAGACTCCCAGTTAAGTGTAGTGTCC
GGAGAGACTGAACAATTAAAGGAGAGTAGACCTAATACAAGTGCATTGCCCATACACCAT
AGTTTCCTTATCTTTTAGCCGTTCTTTAGGATGTTGCACTTTCACACTCATGGTATGAGT
ACATTCACAGTCTTCCTAAAATCATCCGTATTACTTTAAGGTCATAAAAGGGCACAACTC
AGCAGTACATCTTTAGTGATGACTTGGTGCAGTTTTATTGACTAGCAGGCAATATTGACT
CAAATATTGGAGTTCCTGTGATGCTTGTATATCACCACCAACATTAACAAACCATTTCAT
GTCAAAAAGCTTTCAAACTTTTAAAAGGCAGACTCTACATATCTATAACTGTGCACACAC
TCCCATTTTCCGGCACATGTGCAATCCTTTGTACACATATACTTCTCATGTGAATATTTT
ATTATTTTATTTGACCTTATATCTGATTTTCAGATTCTTGTGGTACTTATCTAAAACATT
GGCATTTGTTTTGTTTAATGTTAAATGTATATTATAGAGGCCCCAATAATGTTTAGTCTT
AGGAAATGAGGCACGATTAGGTTAGATCATTTTATATTGGCATTTGAAGAAATATCATTT
TGTTTTATTCTGTGTAAACCATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAGGTACTTGCAGTCAGTGCTCTCAAGCTTGAATTTTTCTAGATTACAT
GAATATTTAGAATTTTAAATTTAAAAAAGAAAACAAGACTCCCAGTTAAGTGTAGTGTCC
GGAGAGACTGAACAATTAAAGGAGAGTAGACCTAATACAAGTGCATTGCCCATACACCAT
AGTTTCCTTATCTTTTAGCCGTTCTTTAGGATGTTGCACTTTCACACTCATGGTATGAGT
ACATTCACAGTCTTCCTAAAATCATCCGTATTACTTTAAGGTCATAAAAGGGCACAACTC
AGCAGTACATCTTTAGTGATGACTTGGTGCAGTTTTATTGACTAGCAGGCAATATTGACT
CAAATATTGGAGTTCCTGTGATGCTTGTATATCACCACCAACATTAACAAACCATTTCAT
GTCAAAAAGCTTTCAAACTTTTAAAAGGCAGACTCTACATATCTATAACTGTGCACACAC
TCCCATTTTCCGGCACATGTGCAATCCTTTGTACACATATACTTCTCATGTGAATATTTT
ATTATTTTATTTGACCTTATATCTGATTTTCAGATTCTTGTGGTACTTATCTAAAACATT
GGCATTTGTTTTGTTTAATGTTAAATGTATATTATAGAGGCCCCAATAATGTTTAGTCTT
AGGAAATGAGGCACGATTAGGTTAGATCATTTTATATTGGCATTTGAAGAAATATCATTT
TGTTTTATTCTGTGTAAACCATAT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               187-744, gnl|bosTau2|chr17 (9314474-9315035)
               

               
               187-744, gnl|Hg17|chr4 (143302495-143301971)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-744, gnl|bosTau2|chr17 (9314474-9315035)
               

               
               187-744, gnl|Hg17|chr4 (143302495-143301971)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ret (0.3862)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	187-744, gnl\|bosTau2\|chr17 (9314474-9315035)
	187-744, gnl\|Hg17\|chr4 (143302495-143301971)

	ret (0.3862)
	bfe (0.149858)
	lin (0.145603)
	kid (0.129735)
	bla (0.124347)
	eje (0.0988338)