Non-Coding RNA Search

Ss1.1-ruio19_j19.5

Sequence:


               
               TTTTTTAAACATTGGCTTGTTTCAATCATACTGTAAATTTTGATTGTGGTCAGCTTTGAG
TGCAAAGGAGATGTATAATTCTGTTACTCATCACATGTCGAGTTTGAAACTCAGTTGGGA
GTATTTAATAGAATGTAAGTGACGTTTGAAAATGTTTTCTAAGTGAATGCTCTTATGTTT
AGCATCAGTGTGTGTGGCTCTGTTAATTCCAGCCATTTCTGAGATGAGATTCTTTTATAT
ATATATATATATATATATATATATATATATATACATACATATATATATATATACACACAC
ACACACACACACACACACATATAAAGTACTATACTTCTTTTAGGAATTTCTTTTATATGC
ATTTATGAAATACTGAAGACCAATCAGCCCATAAATGGACACTTAGTGCAACTTTTTATA
GAGAAAATAATGCTAAAGTAAGACCAAAACTGATGTCATCATTGAAAGTAACAGTTTTCA
ATATGTTCGTATTTTAATTCACAACGGAAAAATGTGTTCCAAAACTGGAAATTCATAATA
CTTGTGTAAACTGTGGAAGATTTTAAATGTGATGTTATTTTGACAATGTTTTAAATTTTA
GTCACATTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAAACATTGGCTTGTTTCAATCATACTGTAAATTTTGATTGTGGTCAGCTTTGAG
TGCAAAGGAGATGTATAATTCTGTTACTCATCACATGTCGAGTTTGAAACTCAGTTGGGA
GTATTTAATAGAATGTAAGTGACGTTTGAAAATGTTTTCTAAGTGAATGCTCTTATGTTT
AGCATCAGTGTGTGTGGCTCTGTTAATTCCAGCCATTTCTGAGATGAGATTCTTTTATAT
ATATATATATATATATATATATATATATATATACATACATATATATATATATACACACAC
ACACACACACACACACACATATAAAGTACTATACTTCTTTTAGGAATTTCTTTTATATGC
ATTTATGAAATACTGAAGACCAATCAGCCCATAAATGGACACTTAGTGCAACTTTTTATA
GAGAAAATAATGCTAAAGTAAGACCAAAACTGATGTCATCATTGAAAGTAACAGTTTTCA
ATATGTTCGTATTTTAATTCACAACGGAAAAATGTGTTCCAAAACTGGAAATTCATAATA
CTTGTGTAAACTGTGGAAGATTTTAAATGTGATGTTATTTTGACAATGTTTTAAATTTTA
GTCACATTTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D1W2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D1W2_MOUSE

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-263, gnl|bosTau2|chr18 (17792736-17793004)
               

               
               1-263, gnl|canFam2|chr2 (67958092-67957571)
               

               
               1-263, gnl|dasNov1|scaffold_5424 (23780-24295)
               

               
               1-263, gnl|galGal2|chr11 (6727889-6727438)
               

               
               1-263, gnl|hg17|chr16 (48821951-48822434)
               

               
               1-263, gnl|Hg17|chr16 (48822084-48822345)
               

               
               1-263, gnl|loxAfr1|scaffold_9591 (52199-51723)
               

               
               1-263, gnl|mm7|chr8 (86850749-86851240)
               

               
               1-263, gnl|Mm7|chr8 (86850883-86851151)
               

               
               1-263, gnl|monDom2|scaffold_35 (14948896-14949456)
               

               
               1-263, gnl|oryCun1|scaffold_211533 (32347-31850)
               

               
               1-263, gnl|panTro1|chrUn_random (12639400-12639883)
               

               
               1-263, gnl|rheMac2|chr20 (48448346-48448831)
               

               
               1-263, gnl|rn3|chr19 (20127862-20127375)
               


               
               446-612, gnl|bosTau2|chr11 (44648387-44648222)
               

               
               446-612, gnl|Mm7|chr8 (86851292-86851442)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-263, gnl|bosTau2|chr18 (17792736-17793004)
               

               
               1-263, gnl|canFam2|chr2 (67958092-67957571)
               

               
               1-263, gnl|dasNov1|scaffold_5424 (23780-24295)
               

               
               1-263, gnl|galGal2|chr11 (6727889-6727438)
               

               
               1-263, gnl|hg17|chr16 (48821951-48822434)
               

               
               1-263, gnl|Hg17|chr16 (48822084-48822345)
               

               
               1-263, gnl|loxAfr1|scaffold_9591 (52199-51723)
               

               
               1-263, gnl|mm7|chr8 (86850749-86851240)
               

               
               1-263, gnl|Mm7|chr8 (86850883-86851151)
               

               
               1-263, gnl|monDom2|scaffold_35 (14948896-14949456)
               

               
               1-263, gnl|oryCun1|scaffold_211533 (32347-31850)
               

               
               1-263, gnl|panTro1|chrUn_random (12639400-12639883)
               

               
               1-263, gnl|rheMac2|chr20 (48448346-48448831)
               

               
               1-263, gnl|rn3|chr19 (20127862-20127375)
               


               
               446-612, gnl|bosTau2|chr11 (44648387-44648222)
               

               
               446-612, gnl|Mm7|chr8 (86851292-86851442)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               kid (0.129735)

	1-263, gnl\|bosTau2\|chr18 (17792736-17793004)
	1-263, gnl\|canFam2\|chr2 (67958092-67957571)
	1-263, gnl\|dasNov1\|scaffold_5424 (23780-24295)
	1-263, gnl\|galGal2\|chr11 (6727889-6727438)
	1-263, gnl\|hg17\|chr16 (48821951-48822434)
	1-263, gnl\|Hg17\|chr16 (48822084-48822345)
	1-263, gnl\|loxAfr1\|scaffold_9591 (52199-51723)
	1-263, gnl\|mm7\|chr8 (86850749-86851240)
	1-263, gnl\|Mm7\|chr8 (86850883-86851151)
	1-263, gnl\|monDom2\|scaffold_35 (14948896-14949456)
	1-263, gnl\|oryCun1\|scaffold_211533 (32347-31850)
	1-263, gnl\|panTro1\|chrUn_random (12639400-12639883)
	1-263, gnl\|rheMac2\|chr20 (48448346-48448831)
	1-263, gnl\|rn3\|chr19 (20127862-20127375)

	446-612, gnl\|bosTau2\|chr11 (44648387-44648222)
	446-612, gnl\|Mm7\|chr8 (86851292-86851442)