Ss1.1-ruio19_j20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTGTAAATCGTGTTTTTGGAGTACTGAACTTCATAGGGGCTTGCCTTAAT CTCTATTTAGTAGTTTCAAGACGTATGCGCTATTATTCTACTTGTTAAAATGTTAAAATA GTCTATGTAGCCCCTAAAGTGGGTAAAACAGAGTATAATTAATGCCTAATAAATAAGCTA AAAGGTGTCACTGCAGCTGGATTTTTGAGAGAAAATGGACATATGAACATAGGCTATGTG TAATAAAAATAATGGCACCTTAAGATTGCACTATTTTATGCATTATTTTATATGCCATTT CATAGCCTGCACTTTAATCTCCAAAGAAACGATGTGTGATGTCCCAGTTGTTCCTTATTA TTAATAAACTTTTTCCTGAGACAGGGCACTTAATTCTATTTTACTATGCCGAATTAGTTT CTTGGAGGTGGATTCCTTTTTTGAGTTCTCTATTTCCTTAGCCATAATATTTTCTAGGAT CTAGGAACTCCCTATCTTGTCTGTTTCCAACAGTATGTAATTTTAATTTAATGTAATATA AAATCTCATATGTGGTGATCAGCACATTCTTCTCTCCTGCTCAAGCAATGAGTACGCATT TGTTAATACTTAGCAAAACCCTCTAAAAATGATCGTATGCTGTAAGATCGAAGGCCAGGA AGAAAGGCATTCTGAAAGGAAGTGCCGTGTATGATACCGCCTCTTGGAAATGGCTATTTC TAAGGTAAAATCCAACCGGAGATGCCATTCAGTTACTTGATTTGGGATCTGAATTCCTTT AAAGTGAATTTTCAAGAAATGCTCAATCTGCAAAATGAAACTAGCAATTAATTGACTACT GCCATGATTTTTAATAGCAATACATTGATCTTTGCGATACATACGATATAGACTTAAGTA ACGTTGGCCTTTTCCAGTTTCCTAAGACTCTTGTTAAATTTCTGAAATTCAAACATTAAA TTGAATTTTTTTCCTGTTGTGTCTGAAGAGAACCATGGAATTCTAGAAGCATTTCGGTCA TCTGTTAGGTCCATTGCCAAAGTATACCAGTTCATATCAAAGCTATACCAAAAGTTTAGA TGTGTTTTAAATTCCTTTCTGTGGTACCATGTCTGTTTACTTATGGTCATGAGCAACAAT CAATTACTAGCTTACGTTCTGGAATTTTAATTGTTAAAACCGAATTCAATTACTGGAAAG TGAAAAACACCTCCCGGTCACACAACAGGGTACGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTGTAAATCGTGTTTTTGGAGTACTGAACTTCATAGGGGCTTGCCTTAAT CTCTATTTAGTAGTTTCAAGACGTATGCGCTATTATTCTACTTGTTAAAATGTTAAAATA GTCTATGTAGCCCCTAAAGTGGGTAAAACAGAGTATAATTAATGCCTAATAAATAAGCTA AAAGGTGTCACTGCAGCTGGATTTTTGAGAGAAAATGGACATATGAACATAGGCTATGTG TAATAAAAATAATGGCACCTTAAGATTGCACTATTTTATGCATTATTTTATATGCCATTT CATAGCCTGCACTTTAATCTCCAAAGAAACGATGTGTGATGTCCCAGTTGTTCCTTATTA TTAATAAACTTTTTCCTGAGACAGGGCACTTAATTCTATTTTACTATGCCGAATTAGTTT CTTGGAGGTGGATTCCTTTTTTGAGTTCTCTATTTCCTTAGCCATAATATTTTCTAGGAT CTAGGAACTCCCTATCTTGTCTGTTTCCAACAGTATGTAATTTTAATTTAATGTAATATA AAATCTCATATGTGGTGATCAGCACATTCTTCTCTCCTGCTCAAGCAATGAGTACGCATT TGTTAATACTTAGCAAAACCCTCTAAAAATGATCGTATGCTGTAAGATCGAAGGCCAGGA AGAAAGGCATTCTGAAAGGAAGTGCCGTGTATGATACCGCCTCTTGGAAATGGCTATTTC TAAGGTAAAATCCAACCGGAGATGCCATTCAGTTACTTGATTTGGGATCTGAATTCCTTT AAAGTGAATTTTCAAGAAATGCTCAATCTGCAAAATGAAACTAGCAATTAATTGACTACT GCCATGATTTTTAATAGCAATACATTGATCTTTGCGATACATACGATATAGACTTAAGTA ACGTTGGCCTTTTCCAGTTTCCTAAGACTCTTGTTAAATTTCTGAAATTCAAACATTAAA TTGAATTTTTTTCCTGTTGTGTCTGAAGAGAACCATGGAATTCTAGAAGCATTTCGGTCA TCTGTTAGGTCCATTGCCAAAGTATACCAGTTCATATCAAAGCTATACCAAAAGTTTAGA TGTGTTTTAAATTCCTTTCTGTGGTACCATGTCTGTTTACTTATGGTCATGAGCAACAAT CAATTACTAGCTTACGTTCTGGAATTTTAATTGTTAAAACCGAATTCAATTACTGGAAAG TGAAAAACACCTCCCGGTCACACAACAGGGTACGTA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 197-311, - strand, RNAz p=0.98038 | |
| 218-539, - strand, RNAz p=0.95163 | |
| 392-550, + strand, RNAz p=0.974449 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 197-311, - strand, RNAz p=0.98038 | |
| 218-539, - strand, RNAz p=0.95163 | |
| 392-550, + strand, RNAz p=0.974449 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 219-331, + strand, RNAmicro p=0.99909 | |
| 201-340, - strand, RNAmicro p=0.934197 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 219-331, + strand, RNAmicro p=0.99909 | |
| 201-340, - strand, RNAmicro p=0.934197 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 218-527, DB787693 full-length enriched swine cDNA library, adult adrenal (dbj|DB787693.1|), blast E-value=0, identity=99.04% | |
| 230-537, zq68b11.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA (gb|AA205352.1|), blast E-value=0, identity=93.83% | |
| 230-537, IL0-HT0205-191099-129-f06 HT0205 Homo sapiens cDNA, mRNA sequence (gb|AW369090.1|), blast E-value=0, identity=94.48% | |
| 230-537, naa09h11.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb|BF475658.1|), blast E-value=0, identity=93.51% | |
| 239-537, 602385923F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG290311.1|), blast E-value=0, identity=93.98% | |
| 230-537, UI-E-EJ0-ahk-o-13-0-UI.r2 UI-E-EJ0 Homo sapiens cDNA clone (gb|BM717113.1|), blast E-value=0, identity=93.83% | |
| 392-527, DB787693 full-length enriched swine cDNA library, adult adrenal (dbj|DB787693.1|), blast E-value=0, identity=97.81% | |
| 392-542, IL0-HT0205-191099-129-f06 HT0205 Homo sapiens cDNA, mRNA sequence (gb|AW369090.1|), blast E-value=4.2039e-45, identity=90.73% | |
| 392-542, 602385923F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG290311.1|), blast E-value=1.00053e-42, identity=90.07% | |
| 398-527, 1243506 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288854.1|), blast E-value=1.00053e-42, identity=93.13% | |
| 392-531, 1398252 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN546807.1|), blast E-value=0, identity=94.33% | |
| 392-531, 000930BEMN029232HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY134815.1|), blast E-value=0, identity=93.62% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 218-527, DB787693 full-length enriched swine cDNA library, adult adrenal (dbj|DB787693.1|), blast E-value=0, identity=99.04% | |
| 230-537, zq68b11.r1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA (gb|AA205352.1|), blast E-value=0, identity=93.83% | |
| 230-537, IL0-HT0205-191099-129-f06 HT0205 Homo sapiens cDNA, mRNA sequence (gb|AW369090.1|), blast E-value=0, identity=94.48% | |
| 230-537, naa09h11.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb|BF475658.1|), blast E-value=0, identity=93.51% | |
| 239-537, 602385923F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG290311.1|), blast E-value=0, identity=93.98% | |
| 230-537, UI-E-EJ0-ahk-o-13-0-UI.r2 UI-E-EJ0 Homo sapiens cDNA clone (gb|BM717113.1|), blast E-value=0, identity=93.83% | |
| 392-527, DB787693 full-length enriched swine cDNA library, adult adrenal (dbj|DB787693.1|), blast E-value=0, identity=97.81% | |
| 392-542, IL0-HT0205-191099-129-f06 HT0205 Homo sapiens cDNA, mRNA sequence (gb|AW369090.1|), blast E-value=4.2039e-45, identity=90.73% | |
| 392-542, 602385923F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE (gb|BG290311.1|), blast E-value=1.00053e-42, identity=90.07% | |
| 398-527, 1243506 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN288854.1|), blast E-value=1.00053e-42, identity=93.13% | |
| 392-531, 1398252 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN546807.1|), blast E-value=0, identity=94.33% | |
| 392-531, 000930BEMN029232HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY134815.1|), blast E-value=0, identity=93.62% |
| Aligned organism(s): 17 entry(ies) | More info |
| Aligned organism(s): 17 entry(ies) | Help | Less info |
| 1-780, gnl|bosTau2|chr16 (14053473-14052732) | |
| 1-780, gnl|canFam2|chr7 (43139976-43138922) | |
| 1-780, gnl|dasNov1|scaffold_96235 (5129-6174) | |
| 1-780, gnl|echTel1|scaffold_246563 (16131-17152) | |
| 1-780, gnl|hg17|chr1 (220655109-220656146) | |
| 1-780, gnl|Hg17|chr1 (220655163-220655939) | |
| 1-780, gnl|loxAfr1|scaffold_14851 (14906-13866) | |
| 1-780, gnl|mm7|chr1 (182298288-182297304) | |
| 1-780, gnl|Mm7|chr1 (182298236-182297501) | |
| 1-780, gnl|monDom2|scaffold_13 (31372200-31373227) | |
| 1-780, gnl|oryCun1|scaffold_201050 (40693-39592) | |
| 1-780, gnl|panTro1|chr1 (204463923-204464960) | |
| 1-780, gnl|rheMac2|chr1 (146329932-146328894) | |
| 1-780, gnl|rn3|chr13 (98504029-98503031) | |
| 788-1236, gnl|bosTau2|chr16 (14052663-14052206) | |
| 788-1236, gnl|Hg17|chr1 (220656007-220656462) | |
| 788-1236, gnl|Mm7|chr1 (182297441-182296990) |
| Aligned organism(s): 17 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-780, gnl|bosTau2|chr16 (14053473-14052732) | |
| 1-780, gnl|canFam2|chr7 (43139976-43138922) | |
| 1-780, gnl|dasNov1|scaffold_96235 (5129-6174) | |
| 1-780, gnl|echTel1|scaffold_246563 (16131-17152) | |
| 1-780, gnl|hg17|chr1 (220655109-220656146) | |
| 1-780, gnl|Hg17|chr1 (220655163-220655939) | |
| 1-780, gnl|loxAfr1|scaffold_14851 (14906-13866) | |
| 1-780, gnl|mm7|chr1 (182298288-182297304) | |
| 1-780, gnl|Mm7|chr1 (182298236-182297501) | |
| 1-780, gnl|monDom2|scaffold_13 (31372200-31373227) | |
| 1-780, gnl|oryCun1|scaffold_201050 (40693-39592) | |
| 1-780, gnl|panTro1|chr1 (204463923-204464960) | |
| 1-780, gnl|rheMac2|chr1 (146329932-146328894) | |
| 1-780, gnl|rn3|chr13 (98504029-98503031) | |
| 788-1236, gnl|bosTau2|chr16 (14052663-14052206) | |
| 788-1236, gnl|Hg17|chr1 (220656007-220656462) | |
| 788-1236, gnl|Mm7|chr1 (182297441-182296990) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| gul (0.532765) | |
| ret (0.3862) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ton (0.1755) | |
| mga (0.160205) | |
| fat (0.147427) | |
| ski (0.146735) | |
| thg (0.126791) | |
| spc (0.113366) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.532765) | |
| ret (0.3862) | |
| lin (0.291206) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| ton (0.1755) | |
| mga (0.160205) | |
| fat (0.147427) | |
| ski (0.146735) | |
| thg (0.126791) | |
| spc (0.113366) |