Non-Coding RNA Search

Ss1.1-ruio19_n13.5

Sequence:


               
               GAGAATGCTTTAAACTAGACCCTGTTTGGAATCCCACTTATATGTAGCTCATCATAATTT
ATCTTATTAAAGAATGTGTTTGTTCAGTGAATTCCAAACTTTTGTGTGTGCTAACCTCAA
AGCGAAGTTCTAAACCTATGTGCCATTACAGTACTTTTGATAAAATTTATTTGGGATTAT
TGTTAACTTGACATTTAAAATAAAAGCACCATTAGCCACACTTAGAATATTCAGTTTTAG
CTTAGAAAGGATTCTTGACTACATATACTTCTGAAAGTTCTCTTTGTGGTAACTCATAGA
TCAAGTAATATCTGATTTTAAACTTCCACTTTACCTCCTACCATTCCAGTTTCTTCATAT
AGAAATAAAACATAATTTCTGTTTTATCATGTCGTCTGATTATCACCTGGATTTTCAGTC
AAGATGCAGCTCCTAAGATTATTGTTATGTTAAATTCATAATTGTCTCTCGCCTTTAATT
ATTAAGGATATAATACTAGTGTTGGGAAAGATTACAAGGGAGTAATTTCATGCAATAAAC
ATGTACTGTAAGTTTCCTTCCTCGTTTTGGAGGGATAAACAACTTTTAAAAAAGTTTCCT
TTCTGTGGACATCTACAGATGTTAGGATTACCAGAAGCAAATCCCAGGAATAAGATCGGT
ATTTTCGTTGCATCTTAAATATCAAACCTTCCTTTAGGAGTACACTGTGTTCTGTGATTT
AAGTGGGTGTGCTTAATTGTTCTGCAGTTTCTGATCAGTTGAAATTAAAAAAAAAAAAAT
CTTGATGCAATAACAGTGGTTTTGCCACTTCTGGTTGTTTGCGGTGGATCTGTCCCATGT
TCAGTCCGGATCTTCTTCACTGTGTTGCCACCTGCTGCTCACAGGTGAAGCTGAAATTCT
CTCAACCAGTGAGTTTCTGCTTCTTATTTTTAGAATAAATCATCAGGGAAATGAAGAGAG
AATGCTTTTGCTCTGGGTTGTGGTCAAGAGCTGATTGAATAATTTAGTGTCCCTGGCACA
CACTAAAAATCGTGTACTTCAGTTGTGATCTCAGTGGCATATTTGTTTGCTTAGGTTTTA
CTATGTTCATTATTGAAGATACTGCGTTGACCAAGTAGTTCATTCCTTTCTCGCTTTTTT
TTTTTTTTAATTTGGGGTTATAACTGCAGTGTTTGAGAACTCAGCATCCTTGTTTTCTAC
AAATACTGACTGAAACAAAACACTGTAAAATGTGTTGTAAAACATTGTAATTACCTTCCC
CATGTCTTTGTTGTATTTGTGCTGAAATGTTTCACATTCCTTTGTCTGGATGAAAAACTT
TGCTTTCATTTTGATTATGTTGCTTACCTTGAAATCAATAGGTTTTGATATTTTCTCTTG
GGAAGATTTTATTCTTTTTGGGAAATATGTAATATAAGATATCTAATAAAAGATAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATGCTTTAAACTAGACCCTGTTTGGAATCCCACTTATATGTAGCTCATCATAATTT
ATCTTATTAAAGAATGTGTTTGTTCAGTGAATTCCAAACTTTTGTGTGTGCTAACCTCAA
AGCGAAGTTCTAAACCTATGTGCCATTACAGTACTTTTGATAAAATTTATTTGGGATTAT
TGTTAACTTGACATTTAAAATAAAAGCACCATTAGCCACACTTAGAATATTCAGTTTTAG
CTTAGAAAGGATTCTTGACTACATATACTTCTGAAAGTTCTCTTTGTGGTAACTCATAGA
TCAAGTAATATCTGATTTTAAACTTCCACTTTACCTCCTACCATTCCAGTTTCTTCATAT
AGAAATAAAACATAATTTCTGTTTTATCATGTCGTCTGATTATCACCTGGATTTTCAGTC
AAGATGCAGCTCCTAAGATTATTGTTATGTTAAATTCATAATTGTCTCTCGCCTTTAATT
ATTAAGGATATAATACTAGTGTTGGGAAAGATTACAAGGGAGTAATTTCATGCAATAAAC
ATGTACTGTAAGTTTCCTTCCTCGTTTTGGAGGGATAAACAACTTTTAAAAAAGTTTCCT
TTCTGTGGACATCTACAGATGTTAGGATTACCAGAAGCAAATCCCAGGAATAAGATCGGT
ATTTTCGTTGCATCTTAAATATCAAACCTTCCTTTAGGAGTACACTGTGTTCTGTGATTT
AAGTGGGTGTGCTTAATTGTTCTGCAGTTTCTGATCAGTTGAAATTAAAAAAAAAAAAAT
CTTGATGCAATAACAGTGGTTTTGCCACTTCTGGTTGTTTGCGGTGGATCTGTCCCATGT
TCAGTCCGGATCTTCTTCACTGTGTTGCCACCTGCTGCTCACAGGTGAAGCTGAAATTCT
CTCAACCAGTGAGTTTCTGCTTCTTATTTTTAGAATAAATCATCAGGGAAATGAAGAGAG
AATGCTTTTGCTCTGGGTTGTGGTCAAGAGCTGATTGAATAATTTAGTGTCCCTGGCACA
CACTAAAAATCGTGTACTTCAGTTGTGATCTCAGTGGCATATTTGTTTGCTTAGGTTTTA
CTATGTTCATTATTGAAGATACTGCGTTGACCAAGTAGTTCATTCCTTTCTCGCTTTTTT
TTTTTTTTAATTTGGGGTTATAACTGCAGTGTTTGAGAACTCAGCATCCTTGTTTTCTAC
AAATACTGACTGAAACAAAACACTGTAAAATGTGTTGTAAAACATTGTAATTACCTTCCC
CATGTCTTTGTTGTATTTGTGCTGAAATGTTTCACATTCCTTTGTCTGGATGAAAAACTT
TGCTTTCATTTTGATTATGTTGCTTACCTTGAAATCAATAGGTTTTGATATTTTCTCTTG
GGAAGATTTTATTCTTTTTGGGAAATATGTAATATAAGATATCTAATAAAAGATAAATCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1440, gnl|bosTau2|chr7 (68643434-68642016)
               

               
               1-1440, gnl|Hg17|chr5 (109231786-109233216)
               

               
               1-1440, gnl|Mm7|chr17 (62962803-62964165)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1440, gnl|bosTau2|chr7 (68643434-68642016)
               

               
               1-1440, gnl|Hg17|chr5 (109231786-109233216)
               

               
               1-1440, gnl|Mm7|chr17 (62962803-62964165)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               sug (0.381874)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	1-1440, gnl\|bosTau2\|chr7 (68643434-68642016)
	1-1440, gnl\|Hg17\|chr5 (109231786-109233216)
	1-1440, gnl\|Mm7\|chr17 (62962803-62964165)

	sug (0.381874)
	liv (0.292569)
	kid (0.259471)
	tra (0.246184)
	cmu (0.186393)
	nje (0.16592)
	csk (0.140746)
	nmm (0.132802)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	med (0.116252)