Ss1.1-ruio20_c23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCGTCAAGAAGGGCGGCGGCAAGAAGAGCGGCAAGAAGGGCTACCTCGGCGGCG GGGCCGGGGCGGCGGGCGGCGCGGACGCGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGC AGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAGATGAAAAAAAAG ATATTGACCATGAAACGGTGGTTGAAGAACAGATCATTGGCGAGAACTCGCCTCCTGATT ATTCCGAGTACATGACAGGAAAGAAACTTCCTCCCGGAGGAATACCCGGCATCGACCTCT CAGATCCCAAACAACTCGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATG ATGCTCCAAGAACAATAGCTTGCCCTCACAAAGGCTGCACAAAGATGTTCAGGGATAACT CTGCCATGAGGAAGCACCTGCACACCCACGGCCCCCGAGTCCACGTCTGTGCAGAATGCG GCAAAGCTTTTGTTGAGAGCTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGA AACCCTTTCAGTGCACGTTTGAAGGCTGCGGGAAGCGCTTTTCACTGGACTTCAATTTGC GCACACACGTGCGCATCCACACCGGAGACAGGCCCTATGTGTGCCCCTTCGACGGTTGTA ATAAGAAGTTTGCTCAGTCGACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCA AAAACAACCAGTGAAAAGAAGAGAGAAGGCCCTTCGCAGCCTCAGGAAGCATCTTCCAGG AGCGTGATTGGGAATAAACATGCCTCTCCTTTGTATATTGTTTCTAGAAAAGAATTTTAA AAATGAATCCTACATACCCAAGGGACATGTTTTGATAAAGTAGTAAAAATTTAAAAAAAA AAACTTTAATAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAA AACACGGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCA AAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAAT ATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTG TACACTTTTTGGGGATATGCTTAGTAATGCTATGTGTGATTTTTCTGGAGGTTGATAACT TTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATT TTCCTGTAAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATT CTTTGATGTTAACACATTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATC AAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTT TTTTTTCCAAAAAATACTGCCAGGTGGTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGT TACAGAAAGTGGTGCTCAGTCGTAGAATGTATTGTACCTTTTAACACCTGACGTGTACAT CCCATGTAACAGAAAGGGCGACAATAAAATAGCAATCCTACAGAAAGAATATGGCAGAAA AGAGATCTGTAAGCACAGTCTTCTTTCCTTTTGTTGTCCAGAATAATTATAATTCTTGAG CCTCCCAGAAATTGGAAGCTAAATAAAGCAACTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCGTCAAGAAGGGCGGCGGCAAGAAGAGCGGCAAGAAGGGCTACCTCGGCGGCG GGGCCGGGGCGGCGGGCGGCGCGGACGCGGGCAACAAGAAGTGGGAGCAGAAGCAGGTGC AGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCCTCAGATGAAAAAAAAG ATATTGACCATGAAACGGTGGTTGAAGAACAGATCATTGGCGAGAACTCGCCTCCTGATT ATTCCGAGTACATGACAGGAAAGAAACTTCCTCCCGGAGGAATACCCGGCATCGACCTCT CAGATCCCAAACAACTCGCAGAATTTGCTAGAATGAAGCCAAGAAAAATTAAAGAAGATG ATGCTCCAAGAACAATAGCTTGCCCTCACAAAGGCTGCACAAAGATGTTCAGGGATAACT CTGCCATGAGGAAGCACCTGCACACCCACGGCCCCCGAGTCCACGTCTGTGCAGAATGCG GCAAAGCTTTTGTTGAGAGCTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGA AACCCTTTCAGTGCACGTTTGAAGGCTGCGGGAAGCGCTTTTCACTGGACTTCAATTTGC GCACACACGTGCGCATCCACACCGGAGACAGGCCCTATGTGTGCCCCTTCGACGGTTGTA ATAAGAAGTTTGCTCAGTCGACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCA AAAACAACCAGTGAAAAGAAGAGAGAAGGCCCTTCGCAGCCTCAGGAAGCATCTTCCAGG AGCGTGATTGGGAATAAACATGCCTCTCCTTTGTATATTGTTTCTAGAAAAGAATTTTAA AAATGAATCCTACATACCCAAGGGACATGTTTTGATAAAGTAGTAAAAATTTAAAAAAAA AAACTTTAATAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAA AACACGGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCA AAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAAT ATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTG TACACTTTTTGGGGATATGCTTAGTAATGCTATGTGTGATTTTTCTGGAGGTTGATAACT TTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATT TTCCTGTAAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATT CTTTGATGTTAACACATTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATC AAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTT TTTTTTCCAAAAAATACTGCCAGGTGGTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGT TACAGAAAGTGGTGCTCAGTCGTAGAATGTATTGTACCTTTTAACACCTGACGTGTACAT CCCATGTAACAGAAAGGGCGACAATAAAATAGCAATCCTACAGAAAGAATATGGCAGAAA AGAGATCTGTAAGCACAGTCTTCTTTCCTTTTGTTGTCCAGAATAATTATAATTCTTGAG CCTCCCAGAAATTGGAAGCTAAATAAAGCAACTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1030-1187, - strand, RNAz p=0.971928 | |
| 1571-1716, + strand, RNAz p=0.993028 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1030-1187, - strand, RNAz p=0.971928 | |
| 1571-1716, + strand, RNAz p=0.993028 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 35-912, gnl|bosTau2|chrX (38782006-38781156) | |
| 35-912, gnl|Hg17|chrX (21634697-21635548) | |
| 35-912, gnl|Mm7|chrX (152342669-152341834) | |
| 152-331, gnl|bosTau2|chr21 (44935333-44935512) | |
| 152-331, gnl|Hg17|chr14 (99798378-99798556) | |
| 152-331, gnl|Mm7|chr12 (106327641-106327820) | |
| 390-551, gnl|bosTau2|chr21 (44944246-44944407) | |
| 390-551, gnl|canFam2|chr8 (71604952-71605143) | |
| 390-551, gnl|canFam2|chr8 (71604979-71605136) | |
| 390-551, gnl|canFam2|chr8 (71605138-71604986) | |
| 390-551, gnl|danRer3|chr17 (33606782-33606975) | |
| 390-551, gnl|danRer3|chr17 (33606811-33606968) | |
| 390-551, gnl|danRer3|chr17 (33606971-33606817) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12355-12544) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12380-12537) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12539-12386) | |
| 390-551, gnl|echTel1|scaffold_283332 (67434-67623) | |
| 390-551, gnl|echTel1|scaffold_283332 (67459-67616) | |
| 390-551, gnl|echTel1|scaffold_283332 (67618-67466) | |
| 390-551, gnl|fr1|chrUn (119578260-119578070) | |
| 390-551, gnl|fr1|chrUn (51840501-51840343) | |
| 390-551, gnl|fr1|chrUn (51840348-51840494) | |
| 390-551, gnl|galGal2|chr5 (45331247-45331434) | |
| 390-551, gnl|galGal2|chr5 (45331272-45331427) | |
| 390-551, gnl|galGal2|chr5 (45331428-45331277) | |
| 390-551, gnl|hg17|chr10 (71915596-71915751) | |
| 390-551, gnl|hg17|chr14 (99812552-99812743) | |
| 390-551, gnl|Hg17|chr14 (99812577-99812738) | |
| 390-551, gnl|hg17|chr2 (139489185-139489341) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30584-30773) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30609-30766) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30768-30615) | |
| 390-551, gnl|mm7|chr12 (106335757-106335948) | |
| 390-551, gnl|mm7|chr12 (106335784-106335941) | |
| 390-551, gnl|mm7|chr12 (106335943-106335790) | |
| 390-551, gnl|Mm7|chr12 (106335782-106335943) | |
| 390-551, gnl|monDom2|scaffold_6 (81802037-81802228) | |
| 390-551, gnl|monDom2|scaffold_6 (81802064-81802221) | |
| 390-551, gnl|monDom2|scaffold_6 (81802224-81802070) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17573-17764) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17600-17757) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17759-17606) | |
| 390-551, gnl|panTro1|chr13 (28508651-28508807) | |
| 390-551, gnl|panTro1|chr15 (100317213-100317404) | |
| 390-551, gnl|panTro1|chr8 (73134421-73134576) | |
| 390-551, gnl|rheMac2|chr12 (2356079-2356235) | |
| 390-551, gnl|rheMac2|chr7 (163553525-163553716) | |
| 390-551, gnl|rheMac2|chr9 (66521854-66521699) | |
| 390-551, gnl|rn3|chr6 (133161871-133162062) | |
| 390-551, gnl|rn3|chr6 (133161898-133162055) | |
| 390-551, gnl|rn3|chr6 (133162057-133161905) | |
| 390-551, gnl|tetNig1|chr10 (5697077-5696889) | |
| 390-551, gnl|tetNig1|chr10 (5696891-5697044) | |
| 390-551, gnl|tetNig1|chr14 (7199906-7199751) | |
| 390-551, gnl|xenTro1|scaffold_341 (565322-565142) | |
| 390-551, gnl|xenTro1|scaffold_341 (565305-565148) | |
| 390-551, gnl|xenTro1|scaffold_341 (565144-565299) | |
| 951-1263, gnl|bosTau2|chr4 (41640803-41640496) | |
| 951-1263, gnl|Hg17|chr14 (99813906-99814207) | |
| 951-1263, gnl|Mm7|chr12 (106337044-106337352) | |
| 1457-1716, gnl|bosTau2|chr19 (16675014-16675272) | |
| 1457-1716, gnl|canFam2|chr9 (48509462-48509373) | |
| 1457-1716, gnl|dasNov1|scaffold_13941 (45861-45958) | |
| 1457-1716, gnl|echTel1|scaffold_285103 (86193-86115) | |
| 1457-1716, gnl|hg17|chr17 (393560-393644) | |
| 1457-1716, gnl|Mm7|chr12 (106337545-106337801) | |
| 1457-1716, gnl|oryCun1|scaffold_148133 (197-108) | |
| 1457-1716, gnl|panTro1|chr19 (496201-496285) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-912, gnl|bosTau2|chrX (38782006-38781156) | |
| 35-912, gnl|Hg17|chrX (21634697-21635548) | |
| 35-912, gnl|Mm7|chrX (152342669-152341834) | |
| 152-331, gnl|bosTau2|chr21 (44935333-44935512) | |
| 152-331, gnl|Hg17|chr14 (99798378-99798556) | |
| 152-331, gnl|Mm7|chr12 (106327641-106327820) | |
| 390-551, gnl|bosTau2|chr21 (44944246-44944407) | |
| 390-551, gnl|canFam2|chr8 (71604952-71605143) | |
| 390-551, gnl|canFam2|chr8 (71604979-71605136) | |
| 390-551, gnl|canFam2|chr8 (71605138-71604986) | |
| 390-551, gnl|danRer3|chr17 (33606782-33606975) | |
| 390-551, gnl|danRer3|chr17 (33606811-33606968) | |
| 390-551, gnl|danRer3|chr17 (33606971-33606817) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12355-12544) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12380-12537) | |
| 390-551, gnl|dasNov1|scaffold_17233 (12539-12386) | |
| 390-551, gnl|echTel1|scaffold_283332 (67434-67623) | |
| 390-551, gnl|echTel1|scaffold_283332 (67459-67616) | |
| 390-551, gnl|echTel1|scaffold_283332 (67618-67466) | |
| 390-551, gnl|fr1|chrUn (119578260-119578070) | |
| 390-551, gnl|fr1|chrUn (51840501-51840343) | |
| 390-551, gnl|fr1|chrUn (51840348-51840494) | |
| 390-551, gnl|galGal2|chr5 (45331247-45331434) | |
| 390-551, gnl|galGal2|chr5 (45331272-45331427) | |
| 390-551, gnl|galGal2|chr5 (45331428-45331277) | |
| 390-551, gnl|hg17|chr10 (71915596-71915751) | |
| 390-551, gnl|hg17|chr14 (99812552-99812743) | |
| 390-551, gnl|Hg17|chr14 (99812577-99812738) | |
| 390-551, gnl|hg17|chr2 (139489185-139489341) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30584-30773) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30609-30766) | |
| 390-551, gnl|loxAfr1|scaffold_42969 (30768-30615) | |
| 390-551, gnl|mm7|chr12 (106335757-106335948) | |
| 390-551, gnl|mm7|chr12 (106335784-106335941) | |
| 390-551, gnl|mm7|chr12 (106335943-106335790) | |
| 390-551, gnl|Mm7|chr12 (106335782-106335943) | |
| 390-551, gnl|monDom2|scaffold_6 (81802037-81802228) | |
| 390-551, gnl|monDom2|scaffold_6 (81802064-81802221) | |
| 390-551, gnl|monDom2|scaffold_6 (81802224-81802070) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17573-17764) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17600-17757) | |
| 390-551, gnl|oryCun1|scaffold_193898 (17759-17606) | |
| 390-551, gnl|panTro1|chr13 (28508651-28508807) | |
| 390-551, gnl|panTro1|chr15 (100317213-100317404) | |
| 390-551, gnl|panTro1|chr8 (73134421-73134576) | |
| 390-551, gnl|rheMac2|chr12 (2356079-2356235) | |
| 390-551, gnl|rheMac2|chr7 (163553525-163553716) | |
| 390-551, gnl|rheMac2|chr9 (66521854-66521699) | |
| 390-551, gnl|rn3|chr6 (133161871-133162062) | |
| 390-551, gnl|rn3|chr6 (133161898-133162055) | |
| 390-551, gnl|rn3|chr6 (133162057-133161905) | |
| 390-551, gnl|tetNig1|chr10 (5697077-5696889) | |
| 390-551, gnl|tetNig1|chr10 (5696891-5697044) | |
| 390-551, gnl|tetNig1|chr14 (7199906-7199751) | |
| 390-551, gnl|xenTro1|scaffold_341 (565322-565142) | |
| 390-551, gnl|xenTro1|scaffold_341 (565305-565148) | |
| 390-551, gnl|xenTro1|scaffold_341 (565144-565299) | |
| 951-1263, gnl|bosTau2|chr4 (41640803-41640496) | |
| 951-1263, gnl|Hg17|chr14 (99813906-99814207) | |
| 951-1263, gnl|Mm7|chr12 (106337044-106337352) | |
| 1457-1716, gnl|bosTau2|chr19 (16675014-16675272) | |
| 1457-1716, gnl|canFam2|chr9 (48509462-48509373) | |
| 1457-1716, gnl|dasNov1|scaffold_13941 (45861-45958) | |
| 1457-1716, gnl|echTel1|scaffold_285103 (86193-86115) | |
| 1457-1716, gnl|hg17|chr17 (393560-393644) | |
| 1457-1716, gnl|Mm7|chr12 (106337545-106337801) | |
| 1457-1716, gnl|oryCun1|scaffold_148133 (197-108) | |
| 1457-1716, gnl|panTro1|chr19 (496201-496285) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| fat (0.58971) | |
| rec (0.519211) | |
| bfe (0.449573) | |
| cty (0.41632) | |
| ste (0.405625) | |
| pla (0.401016) | |
| kid (0.389206) | |
| thg (0.380373) | |
| gul (0.355177) | |
| mga (0.32041) | |
| lin (0.291206) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| tra (0.246184) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.58971) | |
| rec (0.519211) | |
| bfe (0.449573) | |
| cty (0.41632) | |
| ste (0.405625) | |
| pla (0.401016) | |
| kid (0.389206) | |
| thg (0.380373) | |
| gul (0.355177) | |
| mga (0.32041) | |
| lin (0.291206) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| ret (0.257467) | |
| tra (0.246184) | |
| tes (0.207814) | |
| aor (0.195274) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |