Ss1.1-ruio20_n10.5
|
CCCGCTGCTATAAAGGCGACGCCGCGCCACTCGGTTGAAGTCGCCTTGTGCGTCGCTTTT
CTGTCTCTCCGGTTGCGGACACCGCCCTTCTCTCGTCAGCCTCCGGCCCGCCATCTCCTT
GAGCCCAAACACCATGCCTTCAATTAAGTTGCAGAGTTCCGATGGCGAGATATTTGAAGT
TGATGTTGAAATTGCCAAACAGTCTGTGACTATCAAGACCATGTTGGAAGATTTGGGAAT
GGATGATGAAGGAGATGATGATCCAGTCCCTTTACCAAATGTTAATGCAGCAATATTAAA
AAAGGTCATTCAGTGGTGCACCCACCATAAGGATGATCCTCCTCCTCCTGAGGATGATGA
GAACAAGGAAAAGCGAACAGATGATATCCCTGTTTGGGATCAAGAATTCCTGAAAGTCGA
CCAAGGAACACTTTTCGAGCTAATCCTGGCAGCAAACTACTTAGACATCAAAGGTTTGCT
TGATGTTACATGCAAGACTGTTGCTAACATGATCAAGGGGAAAACTCCTGAGGAAATACG
CAAGACCTTCAATATCAAAAATGATTTCACTGAAGAAGAAGAAGCCCAGGTACGCAAAGA
GAACCAGTGGTGTGAGGAGAAGTGAAATCTTGTGCCTGATGCTGAAACACTGTAAGGATA
TTTCCAAATACTAGTTGCACTGCTCTGTTTATAATTGTTAATATTCGAAAAACAGTCGAC
AAATGCAGCAGCAAATCAGTTGTATTAGTGGAATATTGTTCTCATTGCATGTGTAGTTTC
AGTACAGATTCCAAACCTATGGCTGAGTTTCTTCTAGTATGATCTAAAGTTTCTCTTTTC
TTTGCTCTGAATAAAATTGAACTGTGGGTTCTCTATAGGAAGTGGCATATTGGGCTTTGC
CTCTTTATGTAAAGCAATTTCTGCCTAGTTTATTGTCAGTTTACTTTAGTTTAGTGACTT
GGAAAAGTTGGCATTGTAAATAAAGCATCTCAGAAAAATTTTTCTGAGATAGAATTAACA
ATGTATTATCTTTATTCATGAGTTGGAAGCTGGAAAAAGGCCACTTGAGATAAATGTTCT
GAGATGGGGTTATGGGGATGTCTTCCAGCTTCCTAGAGTCAAAGAGTACCACTGGTATTG
ATTAGCCTCTATGTAGCAGGGCTTCCTTAATTGGATCTGAGGACTTGTTTTTGCATTTTT
AATCCTCTCCGCTTTCAATATGGTGGCTAGAAATTCAGTTACTACTCAGTTTGTGGTTTT
GGGGGAAATCTAATTAGATAGTTTGTTAGCTTTTTCAATTAAAAAAGACATGTAACCCAT
GTGGTATGTCATCTTTTTATAATCAGTGATCCCATGTGGAGTAAACTATTTACACTACTT
ACCTGCATGTAAGAAATAATTTAACCTCTAACGTTAAAATGTGTGGCATATCCCAGAAAG
CAACCGTCATGAATGAAAGATACTTTCAATAAAAAGTAAGTAACATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCGCTGCTATAAAGGCGACGCCGCGCCACTCGGTTGAAGTCGCCTTGTGCGTCGCTTTT
CTGTCTCTCCGGTTGCGGACACCGCCCTTCTCTCGTCAGCCTCCGGCCCGCCATCTCCTT
GAGCCCAAACACCATGCCTTCAATTAAGTTGCAGAGTTCCGATGGCGAGATATTTGAAGT
TGATGTTGAAATTGCCAAACAGTCTGTGACTATCAAGACCATGTTGGAAGATTTGGGAAT
GGATGATGAAGGAGATGATGATCCAGTCCCTTTACCAAATGTTAATGCAGCAATATTAAA
AAAGGTCATTCAGTGGTGCACCCACCATAAGGATGATCCTCCTCCTCCTGAGGATGATGA
GAACAAGGAAAAGCGAACAGATGATATCCCTGTTTGGGATCAAGAATTCCTGAAAGTCGA
CCAAGGAACACTTTTCGAGCTAATCCTGGCAGCAAACTACTTAGACATCAAAGGTTTGCT
TGATGTTACATGCAAGACTGTTGCTAACATGATCAAGGGGAAAACTCCTGAGGAAATACG
CAAGACCTTCAATATCAAAAATGATTTCACTGAAGAAGAAGAAGCCCAGGTACGCAAAGA
GAACCAGTGGTGTGAGGAGAAGTGAAATCTTGTGCCTGATGCTGAAACACTGTAAGGATA
TTTCCAAATACTAGTTGCACTGCTCTGTTTATAATTGTTAATATTCGAAAAACAGTCGAC
AAATGCAGCAGCAAATCAGTTGTATTAGTGGAATATTGTTCTCATTGCATGTGTAGTTTC
AGTACAGATTCCAAACCTATGGCTGAGTTTCTTCTAGTATGATCTAAAGTTTCTCTTTTC
TTTGCTCTGAATAAAATTGAACTGTGGGTTCTCTATAGGAAGTGGCATATTGGGCTTTGC
CTCTTTATGTAAAGCAATTTCTGCCTAGTTTATTGTCAGTTTACTTTAGTTTAGTGACTT
GGAAAAGTTGGCATTGTAAATAAAGCATCTCAGAAAAATTTTTCTGAGATAGAATTAACA
ATGTATTATCTTTATTCATGAGTTGGAAGCTGGAAAAAGGCCACTTGAGATAAATGTTCT
GAGATGGGGTTATGGGGATGTCTTCCAGCTTCCTAGAGTCAAAGAGTACCACTGGTATTG
ATTAGCCTCTATGTAGCAGGGCTTCCTTAATTGGATCTGAGGACTTGTTTTTGCATTTTT
AATCCTCTCCGCTTTCAATATGGTGGCTAGAAATTCAGTTACTACTCAGTTTGTGGTTTT
GGGGGAAATCTAATTAGATAGTTTGTTAGCTTTTTCAATTAAAAAAGACATGTAACCCAT
GTGGTATGTCATCTTTTTATAATCAGTGATCCCATGTGGAGTAAACTATTTACACTACTT
ACCTGCATGTAAGAAATAATTTAACCTCTAACGTTAAAATGTGTGGCATATCCCAGAAAG
CAACCGTCATGAATGAAAGATACTTTCAATAAAAAGTAAGTAACATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
33-546, gnl|bosTau2|chr24 (44012627-44012114) |
|
33-546, gnl|Hg17|chr7 (65333127-65332621) |
|
33-546, gnl|Mm7|chr4 (135135214-135134734) |
| |
|
588-1473, gnl|bosTau2|chr7 (30859825-30860679) |
|
588-1473, gnl|canFam2|chr11 (25360221-25359685) |
|
588-1473, gnl|dasNov1|scaffold_170823 (2481-3016) |
|
588-1473, gnl|echTel1|scaffold_314741 (70748-71278) |
|
588-1473, gnl|hg17|chr2 (118842468-118843023) |
|
588-1473, gnl|Hg17|chr5 (133521360-133520475) |
|
588-1473, gnl|loxAfr1|scaffold_31676 (6280-6796) |
|
588-1473, gnl|mm7|chr11 (52203028-52203548) |
|
588-1473, gnl|Mm7|chr11 (52202740-52203577) |
|
588-1473, gnl|monDom2|scaffold_6 (97465915-97465322) |
|
588-1473, gnl|oryCun1|scaffold_12390 (1624-2154) |
|
588-1473, gnl|panTro1|chr13 (4875785-4876340) |
|
588-1473, gnl|rheMac2|chr13 (124534294-124534847) |
|
588-1473, gnl|rn3|chr10 (37686380-37686880) |
| |
|
730-927, gnl|bosTau2|chr22 (30709449-30709649) |
|
730-927, gnl|Hg17|chr7 (65332435-65332233) |
|
730-927, gnl|Mm7|chr11 (52202883-52203050) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
33-546, gnl|bosTau2|chr24 (44012627-44012114) |
|
33-546, gnl|Hg17|chr7 (65333127-65332621) |
|
33-546, gnl|Mm7|chr4 (135135214-135134734) |
| |
|
588-1473, gnl|bosTau2|chr7 (30859825-30860679) |
|
588-1473, gnl|canFam2|chr11 (25360221-25359685) |
|
588-1473, gnl|dasNov1|scaffold_170823 (2481-3016) |
|
588-1473, gnl|echTel1|scaffold_314741 (70748-71278) |
|
588-1473, gnl|hg17|chr2 (118842468-118843023) |
|
588-1473, gnl|Hg17|chr5 (133521360-133520475) |
|
588-1473, gnl|loxAfr1|scaffold_31676 (6280-6796) |
|
588-1473, gnl|mm7|chr11 (52203028-52203548) |
|
588-1473, gnl|Mm7|chr11 (52202740-52203577) |
|
588-1473, gnl|monDom2|scaffold_6 (97465915-97465322) |
|
588-1473, gnl|oryCun1|scaffold_12390 (1624-2154) |
|
588-1473, gnl|panTro1|chr13 (4875785-4876340) |
|
588-1473, gnl|rheMac2|chr13 (124534294-124534847) |
|
588-1473, gnl|rn3|chr10 (37686380-37686880) |
| |
|
730-927, gnl|bosTau2|chr22 (30709449-30709649) |
|
730-927, gnl|Hg17|chr7 (65332435-65332233) |
|
730-927, gnl|Mm7|chr11 (52202883-52203050) |
|
tbr (2.62103) |
|
cbe (2.39234) |
|
bfe (2.24786) |
|
fcc (1.78006) |
|
vin (1.66279) |
|
aor (1.56219) |
|
spc (1.47376) |
|
lyg (1.46413) |
|
cty (1.45712) |
|
fco (1.41487) |
|
fat (1.32685) |
|
kid (1.29735) |
|
thg (1.26791) |
|
amn (1.25313) |
|
hea (1.22699) |
|
rec (1.21149) |
|
ebs (1.18301) |
|
ski (1.17388) |
|
liv (1.17027) |
|
fce (1.08637) |
|
ova (1.03306) |
|
sug (1.01833) |
|
tra (0.984737) |
|
nlu (0.958405) |
|
sme (0.91631) |
|
sag (0.913576) |
|
fbs (0.876732) |
|
bla (0.87043) |
|
spl (0.859107) |
|
eye (0.852515) |
|
tes (0.831255) |
|
ssp (0.813118) |
|
ret (0.7724) |
|
isp (0.75188) |
|
lin (0.728014) |
|
eru (0.720288) |
|
med (0.697512) |
|
eje (0.691836) |
|
nco (0.646935) |
|
cte (0.58548) |
|
ecc (0.575175) |
|
sin (0.524843) |
|
pro (0.512033) |
|
ese (0.506009) |
|
ece (0.45861) |
|
pty (0.428143) |
|
csk (0.422238) |
|
mas (0.42061) |
|
elu (0.385356) |
|
fty (0.351679) |
|
ill (0.351185) |
|
cbl (0.344392) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cag (0.302389) |
|
lun (0.300978) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
ste (0.270416) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
cje (0.165235) |
|
cki (0.165235) |
|
mga (0.160205) |
|
cst (0.140036) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
nbm (0.0993246) |
|
tbr (2.62103) |
|
cbe (2.39234) |
|
bfe (2.24786) |
|
fcc (1.78006) |
|
vin (1.66279) |
|
aor (1.56219) |
|
spc (1.47376) |
|
lyg (1.46413) |
|
cty (1.45712) |
|
fco (1.41487) |
|
fat (1.32685) |
|
kid (1.29735) |
|
thg (1.26791) |
|
amn (1.25313) |
|
hea (1.22699) |
|
rec (1.21149) |
|
ebs (1.18301) |
|
ski (1.17388) |
|
liv (1.17027) |
|
fce (1.08637) |
|
ova (1.03306) |
|
sug (1.01833) |
|
tra (0.984737) |
|
nlu (0.958405) |
|
sme (0.91631) |
|
sag (0.913576) |
|
fbs (0.876732) |
|
bla (0.87043) |
|
spl (0.859107) |
|
eye (0.852515) |
|
tes (0.831255) |
|
ssp (0.813118) |
|
ret (0.7724) |
|
isp (0.75188) |
|
lin (0.728014) |
|
eru (0.720288) |
|
med (0.697512) |
|
eje (0.691836) |
|
nco (0.646935) |
|
cte (0.58548) |
|
ecc (0.575175) |
|
sin (0.524843) |
|
pro (0.512033) |
|
ese (0.506009) |
|
ece (0.45861) |
|
pty (0.428143) |
|
csk (0.422238) |
|
mas (0.42061) |
|
elu (0.385356) |
|
fty (0.351679) |
|
ill (0.351185) |
|
cbl (0.344392) |
|
jca (0.34188) |
|
fhi (0.339155) |
|
nje (0.33184) |
|
cag (0.302389) |
|
lun (0.300978) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
hlv (0.278513) |
|
nca (0.273748) |
|
ste (0.270416) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
col (0.195008) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ton (0.1755) |
|
cje (0.165235) |
|
cki (0.165235) |
|
mga (0.160205) |
|
cst (0.140036) |
|
cov (0.132153) |
|
cbr (0.127975) |
|
cly (0.120642) |
|
nbm (0.0993246) |
