Non-Coding RNA Search

Ss1.1-ruio20_p22.5

Sequence:


               
               GAACCTGCGTTCTCATGGATACTAGTCTGATTTCGTTTCCGCTGAGCCACAACAGGAACT
CCTGTACTTCAACTTCTTAATGTTTCTCCTCTTTGCTTTACTATTTTCTATCTCCTGTTA
TACATTTTTTTTCTTGACCACATGATGAATATGTTGACGACATCATACACTTTAATACTA
CCTTTGTACTTCAGAAGATCAAGCATACTATGTGTGATTATCAAATTCAGGAATTTAACA
TTGATGCGACGCTTTGTAGTCATTATTCAAATTTCATTTGTTGTTCCATTGGTAATTTTT
TTTTTCAGCTTCAGGATCTAGTCCAGGATCATACGTTGTGTTATCATGACTCTAATCTGG
ACCAGCTCTTCAGCCTTTCTTTGTCTTTGTTGATTTATGTGAAGAATATGGGACAGTTAA
AGTATAGGATATCCTTCCATTTGAGTTTTTCTGATTCTTCTTTCTGGTTAGATTTGGGAT
ATGCAGTATGGGCTGACTATGAGTGATGGGCCCAATGTCACATCCAGACTCATAGAATGT
CCCATTGCCTCTTGTTGGTAATGTTAATTTGATCACTTGTTTAAGATGTCATCCAGTTTC
TCCACTATATAATTACTATTTTTCCTTTCGCAATTAGTAGATAATTTGTGAAAAACTTTG
AGACCATGTTGATTGATAGTCTATTCCTCATTAAACCTTTCTCTCCTAGATTTAGCATCT
TTTGATAATTCTTGTCTGAATAAATTTTTACTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTGCGTTCTCATGGATACTAGTCTGATTTCGTTTCCGCTGAGCCACAACAGGAACT
CCTGTACTTCAACTTCTTAATGTTTCTCCTCTTTGCTTTACTATTTTCTATCTCCTGTTA
TACATTTTTTTTCTTGACCACATGATGAATATGTTGACGACATCATACACTTTAATACTA
CCTTTGTACTTCAGAAGATCAAGCATACTATGTGTGATTATCAAATTCAGGAATTTAACA
TTGATGCGACGCTTTGTAGTCATTATTCAAATTTCATTTGTTGTTCCATTGGTAATTTTT
TTTTTCAGCTTCAGGATCTAGTCCAGGATCATACGTTGTGTTATCATGACTCTAATCTGG
ACCAGCTCTTCAGCCTTTCTTTGTCTTTGTTGATTTATGTGAAGAATATGGGACAGTTAA
AGTATAGGATATCCTTCCATTTGAGTTTTTCTGATTCTTCTTTCTGGTTAGATTTGGGAT
ATGCAGTATGGGCTGACTATGAGTGATGGGCCCAATGTCACATCCAGACTCATAGAATGT
CCCATTGCCTCTTGTTGGTAATGTTAATTTGATCACTTGTTTAAGATGTCATCCAGTTTC
TCCACTATATAATTACTATTTTTCCTTTCGCAATTAGTAGATAATTTGTGAAAAACTTTG
AGACCATGTTGATTGATAGTCTATTCCTCATTAAACCTTTCTCTCCTAGATTTAGCATCT
TTTGATAATTCTTGTCTGAATAAATTTTTACTGTCA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               186-754, gnl|bosTau2|chr11 (23029815-23030405)
               

               
               186-754, gnl|Hg17|chr2 (46768117-46768704)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-754, gnl|bosTau2|chr11 (23029815-23030405)
               

               
               186-754, gnl|Hg17|chr2 (46768117-46768704)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               hea (0.408998)
               

               
               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	186-754, gnl\|bosTau2\|chr11 (23029815-23030405)
	186-754, gnl\|Hg17\|chr2 (46768117-46768704)

	hea (0.408998)
	gul (0.355177)
	mgp (0.230681)
	sag (0.182715)
	isp (0.150376)
	lin (0.145603)
	ssp (0.13552)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	spc (0.113366)