Non-Coding RNA Search

Ss1.1-ruio21_b11.5

Sequence:


               
               GAGTACTGGAGTGTATGTTTTAAGTACAGCCTTGAGAACCTGTGATCAGTTTCCAAGGCT
TGAAGAAAGGTGCCTGGAAGCCACACTGTACAGCACGTATGTAGAGGGGAGGTCAGTCAT
CCTTGTTTGGCACTTATCAGAGTCACTCTCCCTCAGAAGGTGCACAGGCTTTTCACACAA
GGAGGACTGGAGGGCTGGGAAATCTCCCCCCTCCCTGCTGCATCCCCTTCCCTCATTGTA
AAGTGTCCTAATCTACCAGCAGCAAACCTCCTTGGTTTGAAAATTTCAGGTTATCCATAG
CCTTACATTAGCTGGCTTGATTTTTACGTCAACACTCCTGCATTCTTAGCTGGTATTTGG
AGGAAATACTGCCCAGGGTTAGGGGGATGGAAAAACAAGGTCTTGATTTGCTAAGGATAA
TGTCTGGTTCTTGTGAGCTGTACAAGGGCTAATTTATAGCCCTTTGACTTTGGTCTTGGG
GGTGGTAGGAGGTGGGACATTTGGGTGATTTCTTGGTTGGCAATGAGGATAAACTGTTAA
TGCTTTTTTCAGAGCTTAACTGCTTTGTCCTATTGGACAAATTGCTAAGAGATCTATTGG
TACTTACTTGACAGCCATGTTCAACTATGGAAGGAGAGAATTTGCCTGAACAAGGCCAAA
CTAAAGGCATCAATTCATTGGTCAAATATTTGATACCTGGAATGGAACTTGAAAAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTACTGGAGTGTATGTTTTAAGTACAGCCTTGAGAACCTGTGATCAGTTTCCAAGGCT
TGAAGAAAGGTGCCTGGAAGCCACACTGTACAGCACGTATGTAGAGGGGAGGTCAGTCAT
CCTTGTTTGGCACTTATCAGAGTCACTCTCCCTCAGAAGGTGCACAGGCTTTTCACACAA
GGAGGACTGGAGGGCTGGGAAATCTCCCCCCTCCCTGCTGCATCCCCTTCCCTCATTGTA
AAGTGTCCTAATCTACCAGCAGCAAACCTCCTTGGTTTGAAAATTTCAGGTTATCCATAG
CCTTACATTAGCTGGCTTGATTTTTACGTCAACACTCCTGCATTCTTAGCTGGTATTTGG
AGGAAATACTGCCCAGGGTTAGGGGGATGGAAAAACAAGGTCTTGATTTGCTAAGGATAA
TGTCTGGTTCTTGTGAGCTGTACAAGGGCTAATTTATAGCCCTTTGACTTTGGTCTTGGG
GGTGGTAGGAGGTGGGACATTTGGGTGATTTCTTGGTTGGCAATGAGGATAAACTGTTAA
TGCTTTTTTCAGAGCTTAACTGCTTTGTCCTATTGGACAAATTGCTAAGAGATCTATTGG
TACTTACTTGACAGCCATGTTCAACTATGGAAGGAGAGAATTTGCCTGAACAAGGCCAAA
CTAAAGGCATCAATTCATTGGTCAAATATTTGATACCTGGAATGGAACTTGAAAAAATAC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               69-321, - strand, RNAz p=0.985822
               

               
               118-274, - strand, RNAz p=0.99973
               

               
               375-608, - strand, RNAz p=0.850938
               

               
               479-598, + strand, RNAz p=0.999023

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-321, - strand, RNAz p=0.985822
               

               
               118-274, - strand, RNAz p=0.99973
               

               
               375-608, - strand, RNAz p=0.850938
               

               
               479-598, + strand, RNAz p=0.999023

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               538-625, + strand, RNAmicro p=0.997207

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               538-625, + strand, RNAmicro p=0.997207

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               479-563, 1248999 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN512886.1|), 
blast E-value=1e-22, identity=92.94% 
               

               
               479-563, 1475431 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892960.1|), 
blast E-value=1e-22, identity=92.94% 
               

               
               479-563, 1478791 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT899740.1|), 
blast E-value=1e-22, identity=92.94%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               479-563, 1248999 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN512886.1|), 
blast E-value=1e-22, identity=92.94% 
               

               
               479-563, 1475431 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT892960.1|), 
blast E-value=1e-22, identity=92.94% 
               

               
               479-563, 1478791 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT899740.1|), 
blast E-value=1e-22, identity=92.94%

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-720, gnl|bosTau2|chr8 (24079465-24078742)
               

               
               1-720, gnl|canFam2|chr1 (86506028-86506571)
               

               
               1-720, gnl|dasNov1|scaffold_12829 (48001-48545)
               

               
               1-720, gnl|hg17|chr2 (143663304-143663963)
               

               
               1-720, gnl|Hg17|chr9 (74567712-74566983)
               

               
               1-720, gnl|loxAfr1|scaffold_33059 (24263-24943)
               

               
               1-720, gnl|oryCun1|scaffold_198420 (264876-264278)
               

               
               1-720, gnl|panTro1|chr13 (32700711-32701371)
               

               
               1-720, gnl|rheMac2|chr12 (6624667-6625326)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr8 (24079465-24078742)
               

               
               1-720, gnl|canFam2|chr1 (86506028-86506571)
               

               
               1-720, gnl|dasNov1|scaffold_12829 (48001-48545)
               

               
               1-720, gnl|hg17|chr2 (143663304-143663963)
               

               
               1-720, gnl|Hg17|chr9 (74567712-74566983)
               

               
               1-720, gnl|loxAfr1|scaffold_33059 (24263-24943)
               

               
               1-720, gnl|oryCun1|scaffold_198420 (264876-264278)
               

               
               1-720, gnl|panTro1|chr13 (32700711-32701371)
               

               
               1-720, gnl|rheMac2|chr12 (6624667-6625326)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               kid (0.259471)
               

               
               col (0.195008)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               col (0.195008)

	69-321, - strand, RNAz p=0.985822
	118-274, - strand, RNAz p=0.99973
	375-608, - strand, RNAz p=0.850938
	479-598, + strand, RNAz p=0.999023

	479-563, 1248999 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN512886.1\|), blast E-value=1e-22, identity=92.94%
	479-563, 1475431 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT892960.1\|), blast E-value=1e-22, identity=92.94%
	479-563, 1478791 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT899740.1\|), blast E-value=1e-22, identity=92.94%

	1-720, gnl\|bosTau2\|chr8 (24079465-24078742)
	1-720, gnl\|canFam2\|chr1 (86506028-86506571)
	1-720, gnl\|dasNov1\|scaffold_12829 (48001-48545)
	1-720, gnl\|hg17\|chr2 (143663304-143663963)
	1-720, gnl\|Hg17\|chr9 (74567712-74566983)
	1-720, gnl\|loxAfr1\|scaffold_33059 (24263-24943)
	1-720, gnl\|oryCun1\|scaffold_198420 (264876-264278)
	1-720, gnl\|panTro1\|chr13 (32700711-32701371)
	1-720, gnl\|rheMac2\|chr12 (6624667-6625326)