Non-Coding RNA Search

Ss1.1-ruio21_n3.5

Sequence:


               
               GGGACGTCCATCGTGGGAGAGGGCCCTAGAGTCCGGCGCGGGCGGGCGGGCAGACGGGCG
TGGGAAGAGGCCCGGCCGCCAACCACGGCTTACCGGCTGCCGCTCGGGTGGACGACGCCT
AGAGATGCCACCGCTAATAATTTTTTATTAATATTTTTATTTTTTATTTCTGGACTGACT
CATATTAAGGGATTTAGAAAGACAGCACTTCTCCGGACTCCTCTCCTCCATCCGTTGCCA
ACTTTGATTGAATGGGTGCTGTGGATGTGATTCTATAATACTGCCCTTTGCAAGCAGTGT
TTTTGGTAGGTTTTAATAAACAGACTTTTCAAAAGACGGCAATATAGAATTGTTAGATCC
GTTGTTGATCTAAAAATATTTGCTTTATATTTTCATTAAATGACTTCTTTTAATATTTTA
TTCAGAATACTTATGAACTGCTGCAAAACGGTAATTTATTTTTCCCCAGATCTTGTATTA
CGTGTTTTTTTCAGACGAGCACAAATCAAAATGAAATGAAAATATGGACAGTTGTTAGGT
AATAAGGGTATCTTTTGATGTGATCATTTGATTGTAATTTAATTTGAGTAGTGATTCCGT
AAGAGCTGATCGAGAAAATAAATTTGTTAGAATGAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACGTCCATCGTGGGAGAGGGCCCTAGAGTCCGGCGCGGGCGGGCGGGCAGACGGGCG
TGGGAAGAGGCCCGGCCGCCAACCACGGCTTACCGGCTGCCGCTCGGGTGGACGACGCCT
AGAGATGCCACCGCTAATAATTTTTTATTAATATTTTTATTTTTTATTTCTGGACTGACT
CATATTAAGGGATTTAGAAAGACAGCACTTCTCCGGACTCCTCTCCTCCATCCGTTGCCA
ACTTTGATTGAATGGGTGCTGTGGATGTGATTCTATAATACTGCCCTTTGCAAGCAGTGT
TTTTGGTAGGTTTTAATAAACAGACTTTTCAAAAGACGGCAATATAGAATTGTTAGATCC
GTTGTTGATCTAAAAATATTTGCTTTATATTTTCATTAAATGACTTCTTTTAATATTTTA
TTCAGAATACTTATGAACTGCTGCAAAACGGTAATTTATTTTTCCCCAGATCTTGTATTA
CGTGTTTTTTTCAGACGAGCACAAATCAAAATGAAATGAAAATATGGACAGTTGTTAGGT
AATAAGGGTATCTTTTGATGTGATCATTTGATTGTAATTTAATTTGAGTAGTGATTCCGT
AAGAGCTGATCGAGAAAATAAATTTGTTAGAATGAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               13-637, gnl|bosTau2|chr11 (6552276-6552902)
               

               
               13-637, gnl|Hg17|chr2 (104932875-104933550)
               

               
               13-637, gnl|Mm7|chr1 (42939951-42940595)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-637, gnl|bosTau2|chr11 (6552276-6552902)
               

               
               13-637, gnl|Hg17|chr2 (104932875-104933550)
               

               
               13-637, gnl|Mm7|chr1 (42939951-42940595)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               spc (0.566829)
               

               
               fco (0.314416)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               fco (0.314416)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	13-637, gnl\|bosTau2\|chr11 (6552276-6552902)
	13-637, gnl\|Hg17\|chr2 (104932875-104933550)
	13-637, gnl\|Mm7\|chr1 (42939951-42940595)

	spc (0.566829)
	fco (0.314416)
	hyp (0.142837)
	kid (0.129735)
	ebs (0.118301)
	ecc (0.115035)