Non-Coding RNA Search

Ss1.1-ruio22_n18.5

Sequence:


               
               TTCTTAGATACAACTTTATTTTCTTGATTTATTTGTAAACATTGCTGAACTGCGCCTAGA
ATGGAATGTTGATTTGGAAATGTTTGAGACCGGCCTAATGGCTCTTCTCAGATAGTTTAT
CTGAGATGTTGATATGAGTGTATCAAATTTTCGTTCTTTTAAATCTCGTACCTTGCTGTT
GATTGTTCTGTCGGTGGAGCTGCATGAATTTTTCCTGGCACAGACAGATAATGAAAAGAC
TTATAAAACGATATGTTTTGAAAGCACAAGTAGACAAAGAAAATGATGAAGTTAATGAAG
GTGAATTAAAAGAAATCAAGCAAGATATCTCCAGCCTTCGCTATGAACTTTTGGAGGACA
AGAGCCAAGCAACTGAAGAATTAGCCATTCTAATTCATAAACTCAGTGAGAAGCTGAATC
CCAGCATGCTGAGATGTGAATGATTCAGTAACCTGTAATTATGGCTTCGACTATAGCACA
AATGTGGGCAATAATATTTCTAAGTATGAAATACTTGAAAAAACTATGGTGTAAATTTTT
AGTGTTAATTACCTTTATCATGTGAATCTTTAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTAGATACAACTTTATTTTCTTGATTTATTTGTAAACATTGCTGAACTGCGCCTAGA
ATGGAATGTTGATTTGGAAATGTTTGAGACCGGCCTAATGGCTCTTCTCAGATAGTTTAT
CTGAGATGTTGATATGAGTGTATCAAATTTTCGTTCTTTTAAATCTCGTACCTTGCTGTT
GATTGTTCTGTCGGTGGAGCTGCATGAATTTTTCCTGGCACAGACAGATAATGAAAAGAC
TTATAAAACGATATGTTTTGAAAGCACAAGTAGACAAAGAAAATGATGAAGTTAATGAAG
GTGAATTAAAAGAAATCAAGCAAGATATCTCCAGCCTTCGCTATGAACTTTTGGAGGACA
AGAGCCAAGCAACTGAAGAATTAGCCATTCTAATTCATAAACTCAGTGAGAAGCTGAATC
CCAGCATGCTGAGATGTGAATGATTCAGTAACCTGTAATTATGGCTTCGACTATAGCACA
AATGTGGGCAATAATATTTCTAAGTATGAAATACTTGAAAAAACTATGGTGTAAATTTTT
AGTGTTAATTACCTTTATCATGTGAATCTTTAAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               301-499, + strand, RNAz p=0.589466

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-499, + strand, RNAz p=0.589466

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003305, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003305, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               301-576, gnl|bosTau2|chr6 (816539-816810)
               

               
               301-576, gnl|Hg17|chr4 (123158638-123158366)
               

               
               301-576, gnl|Mm7|chr3 (36432178-36431902)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               301-576, gnl|bosTau2|chr6 (816539-816810)
               

               
               301-576, gnl|Hg17|chr4 (123158638-123158366)
               

               
               301-576, gnl|Mm7|chr3 (36432178-36431902)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	301-576, gnl\|bosTau2\|chr6 (816539-816810)
	301-576, gnl\|Hg17\|chr4 (123158638-123158366)
	301-576, gnl\|Mm7\|chr3 (36432178-36431902)