Non-Coding RNA Search

Ss1.1-ruio23_b19.5

Sequence:


               
               GTATACATTTTCTAATGATAAATCTATAATGATCAAGGGACAGTTCTCTCAAACACTGCA
AGAGTTTTGTACACAACTGCTCATGAAAATATGGAATTTCTTATTTTTTTACTCTGGAGG
TAATACTTTTAAAATTGCCTGTGCAGGTGAAGTCACGGGGATACTTAGAGATAAGATAAT
ACAAAGATCCTAGAAATTACACTAACAAAAGCATACAGTGATGATAGGGTCTATCAAATA
TAATAATGTGAAAAACAGATTCATGAAAATATGTTCCTTTAAGTCAGGTATTGTTAATCT
ATAGGCATATTTAACAAGATGTTTCAACTTACTGTATATTTTGTACTTATTGTAAATGTT
GCTCTAATCAGATTGCTTTAAAGCACTTTTATTATATTTGTTATTTTGTTGAGCTAATAT
ATAGAAGTAAATGTATATTCCACAAGGAACTTCATTGATGAGATTGCACTGTCTTGATTA
CATAAGCATATGCATCTTCTTTGGTAATAGAATGTAAAAGAGAGCTATATAAGGCTTTTC
TAACTTTTCCAAGCAAAATCCTGAAATGTTTTATGACTAATGTTTATCTGGATGTAATCT
TAATTGGTATTTCATCTAGGAGATGCTTTCTGTCTTGTAGTTAGAAATTAAACCTGTATT
CTGCACTCCTATTGATTTTTCACTACCTTCAAGTAATATTGGTGCTATTCAATAACATTT
TACAATAAAGGCTATTTCTGACACTTAAGTATGATTTCAATGATAGTGATTCACATAGAG
GCTTTCAGACAAGTTGTCAGCTTCTTGGGTCCATGCTACTGAGCTACATATATATAAATT
AAAAACTAACTGCTACAAACTACAAGATCTTATTGGATATGAATTTTGTTACACTGCATA
AAATTATTCTTATCATTTTTGAACTATAGAGTCTTAATTCACATTTATGAGTCACTTTTG
TTTTAAAACCCTATTCTAAAATGATAGGCATGTACAAAAGATCTCTGTGATGTAGGTGGT
TACTATAATTTACACATCTTAAAAGTGTGTAAATGCTCAAATTTCGGAATTACTATAAGA
ACTCGGATTAATGTTCCTTTGAATAGCTTCATAGGTGACAGCTCCTTATTCAATGAAGAT
TAATTTTATTATTCCCAAATTTCCAAGACTGGTAAATATTAAGGATGATTGAACTGGAAT
ACTATTGAGGACCAGAGCAAATGAATGATTAAATCATAAAACTCATACACTCTCAAAGGT
AGCTACAAAAAAAAAGACTTTACAAAACTGCCTTAGGCCATTGTAACATCCTTAGAAAAC
ACTCTCAGGATCATTAACTTGAAGCATTACTACTAATTTGACTATATAGATGTTATTCTG
TTTTTTTAAAAGGTCAATCAGTCTCACAACTTTATAGTTATACTTTGTATTTAAGCTGTT
TTTAAAAAATATTTAGATATGTTGATTGGGCAAAAGTATTTGATTAATAAAATATCTATT
TAAATAAATCATGAGCTTCTATATTTTCAAATAGTTATTGGCAAGTTTTAAAGCCAAAAT
ATATACACATAGTCATATAACAAAACCTACTGACTTTTAACAAGTGGAATGTATGATTTC
CTGATTTCTGAATAAAATTGATCATTTTCAAAATACATTTTTATTGGGATTTGTTATTAA
CTATTTCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATACATTTTCTAATGATAAATCTATAATGATCAAGGGACAGTTCTCTCAAACACTGCA
AGAGTTTTGTACACAACTGCTCATGAAAATATGGAATTTCTTATTTTTTTACTCTGGAGG
TAATACTTTTAAAATTGCCTGTGCAGGTGAAGTCACGGGGATACTTAGAGATAAGATAAT
ACAAAGATCCTAGAAATTACACTAACAAAAGCATACAGTGATGATAGGGTCTATCAAATA
TAATAATGTGAAAAACAGATTCATGAAAATATGTTCCTTTAAGTCAGGTATTGTTAATCT
ATAGGCATATTTAACAAGATGTTTCAACTTACTGTATATTTTGTACTTATTGTAAATGTT
GCTCTAATCAGATTGCTTTAAAGCACTTTTATTATATTTGTTATTTTGTTGAGCTAATAT
ATAGAAGTAAATGTATATTCCACAAGGAACTTCATTGATGAGATTGCACTGTCTTGATTA
CATAAGCATATGCATCTTCTTTGGTAATAGAATGTAAAAGAGAGCTATATAAGGCTTTTC
TAACTTTTCCAAGCAAAATCCTGAAATGTTTTATGACTAATGTTTATCTGGATGTAATCT
TAATTGGTATTTCATCTAGGAGATGCTTTCTGTCTTGTAGTTAGAAATTAAACCTGTATT
CTGCACTCCTATTGATTTTTCACTACCTTCAAGTAATATTGGTGCTATTCAATAACATTT
TACAATAAAGGCTATTTCTGACACTTAAGTATGATTTCAATGATAGTGATTCACATAGAG
GCTTTCAGACAAGTTGTCAGCTTCTTGGGTCCATGCTACTGAGCTACATATATATAAATT
AAAAACTAACTGCTACAAACTACAAGATCTTATTGGATATGAATTTTGTTACACTGCATA
AAATTATTCTTATCATTTTTGAACTATAGAGTCTTAATTCACATTTATGAGTCACTTTTG
TTTTAAAACCCTATTCTAAAATGATAGGCATGTACAAAAGATCTCTGTGATGTAGGTGGT
TACTATAATTTACACATCTTAAAAGTGTGTAAATGCTCAAATTTCGGAATTACTATAAGA
ACTCGGATTAATGTTCCTTTGAATAGCTTCATAGGTGACAGCTCCTTATTCAATGAAGAT
TAATTTTATTATTCCCAAATTTCCAAGACTGGTAAATATTAAGGATGATTGAACTGGAAT
ACTATTGAGGACCAGAGCAAATGAATGATTAAATCATAAAACTCATACACTCTCAAAGGT
AGCTACAAAAAAAAAGACTTTACAAAACTGCCTTAGGCCATTGTAACATCCTTAGAAAAC
ACTCTCAGGATCATTAACTTGAAGCATTACTACTAATTTGACTATATAGATGTTATTCTG
TTTTTTTAAAAGGTCAATCAGTCTCACAACTTTATAGTTATACTTTGTATTTAAGCTGTT
TTTAAAAAATATTTAGATATGTTGATTGGGCAAAAGTATTTGATTAATAAAATATCTATT
TAAATAAATCATGAGCTTCTATATTTTCAAATAGTTATTGGCAAGTTTTAAAGCCAAAAT
ATATACACATAGTCATATAACAAAACCTACTGACTTTTAACAAGTGGAATGTATGATTTC
CTGATTTCTGAATAAAATTGATCATTTTCAAAATACATTTTTATTGGGATTTGTTATTAA
CTATTTCATTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1692, gnl|bosTau2|chr4 (27245008-27243327)
               

               
               1-1692, gnl|Hg17|chr7 (115740402-115742416)
               

               
               1-1692, gnl|Mm7|chr6 (17227749-17229338)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1692, gnl|bosTau2|chr4 (27245008-27243327)
               

               
               1-1692, gnl|Hg17|chr7 (115740402-115742416)
               

               
               1-1692, gnl|Mm7|chr6 (17227749-17229338)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               liv (1.31656)
               

               
               bfe (0.749288)
               

               
               jca (0.45584)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (1.31656)
               

               
               bfe (0.749288)
               

               
               jca (0.45584)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               mgm (0.360685)
               

               
               gul (0.355177)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-1692, gnl\|bosTau2\|chr4 (27245008-27243327)
	1-1692, gnl\|Hg17\|chr7 (115740402-115742416)
	1-1692, gnl\|Mm7\|chr6 (17227749-17229338)

	liv (1.31656)
	bfe (0.749288)
	jca (0.45584)
	fat (0.442282)
	aor (0.390549)
	mgm (0.360685)
	gul (0.355177)
	kid (0.259471)
	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	hea (0.204499)
	nlu (0.191681)
	sin (0.174948)
	mga (0.160205)
	tbr (0.154178)
	spl (0.143184)
	hlv (0.139256)
	ute (0.132784)
	tra (0.123092)
	eru (0.120048)
	pgl (0.118483)