Non-Coding RNA Search

Ss1.1-ruio23_e9.5

Sequence:


               
               TGAAAGAATTCCTTACATAGTCTATAACTAGGACTAGTCCTGCTAATAGTGATACATTCC
ATTGTTTTAAAAACTAAAATCTTATAATGAAAGATACTTTAAAATTTAATAAAGTTTAAT
CTTTTGGCAGAGTTCATTTATTCAACAAATATTTGAGTGCCTACTAGATGCCAGGCACTA
CGCAAGGCTCTGGGGATATTATAGTATCCCCAAGAAAGGGACGTGATCCTTATCCTTAAG
TAGTTCTTTGGTTCTAGAGTGGGCTATAACATCTTAGGCATTTGGCAGATGACCCAGATA
TAACATAATGCATATTGTGGTTTTGCAAAGAAGGGATCTAGTCTCTAAGGTTTCTTCCGG
TTCTAAAATAATTGTTTTGCTCTGATTCTCATGTAACTGTTTAAAGAAGCTACATCTTTT
TATTAAATCAGTTTACTTCATTGTTTTAAAGAAATAAATTTGATATATTTGGCATAATCA
TGTGATTCTATTGGGACAATTATAGTACAAATTAAGTTGTATGTCAGATAATATTAAAAT
TCCCTTATGTGTAATATAGTCTCTTTGTATGAGTAATTAAAATAAACTTTAAAAATTAAA
CATTGAATTCTAAAATAGTTTATCTGGGTAAAAATAAACAGATGCCTGCACTAATTCACA
GAAAAGGCAACTTCTGTGTAAAATCAGTATGATTTCTAAAATGCAGTACTAAACTACATG
TTTATGGAACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGAATTCCTTACATAGTCTATAACTAGGACTAGTCCTGCTAATAGTGATACATTCC
ATTGTTTTAAAAACTAAAATCTTATAATGAAAGATACTTTAAAATTTAATAAAGTTTAAT
CTTTTGGCAGAGTTCATTTATTCAACAAATATTTGAGTGCCTACTAGATGCCAGGCACTA
CGCAAGGCTCTGGGGATATTATAGTATCCCCAAGAAAGGGACGTGATCCTTATCCTTAAG
TAGTTCTTTGGTTCTAGAGTGGGCTATAACATCTTAGGCATTTGGCAGATGACCCAGATA
TAACATAATGCATATTGTGGTTTTGCAAAGAAGGGATCTAGTCTCTAAGGTTTCTTCCGG
TTCTAAAATAATTGTTTTGCTCTGATTCTCATGTAACTGTTTAAAGAAGCTACATCTTTT
TATTAAATCAGTTTACTTCATTGTTTTAAAGAAATAAATTTGATATATTTGGCATAATCA
TGTGATTCTATTGGGACAATTATAGTACAAATTAAGTTGTATGTCAGATAATATTAAAAT
TCCCTTATGTGTAATATAGTCTCTTTGTATGAGTAATTAAAATAAACTTTAAAAATTAAA
CATTGAATTCTAAAATAGTTTATCTGGGTAAAAATAAACAGATGCCTGCACTAATTCACA
GAAAAGGCAACTTCTGTGTAAAATCAGTATGATTTCTAAAATGCAGTACTAAACTACATG
TTTATGGAACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               101-295, - strand, RNAz p=0.969905

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-295, - strand, RNAz p=0.969905

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               122-244, CT02029B1D07 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX601412.1|), blast E-value=6e-26, identity=87.8%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               122-244, CT02029B1D07 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX601412.1|), blast E-value=6e-26, identity=87.8%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-732, gnl|bosTau2|chr5 (51705783-51706513)
               

               
               1-732, gnl|Hg17|chr12 (25251847-25250877)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr5 (51705783-51706513)
               

               
               1-732, gnl|Hg17|chr12 (25251847-25250877)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               lin (0.291206)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               lin (0.291206)
               

               
               kid (0.129735)
               

               
               ldo (0.0970026)

	1-732, gnl\|bosTau2\|chr5 (51705783-51706513)
	1-732, gnl\|Hg17\|chr12 (25251847-25250877)