Non-Coding RNA Search

Ss1.1-ruio23_l15.5

Sequence:


               
               GATTAATTTCACTAAATCTAATATTTTAAATAATATTCATTTGAAATGTGCATTAAATCA
TAATTAACCATGTTAGAATGAAAAGCCACAAATAATCTACATACCTTATTGAAAAATGGT
TTAATAAATAATTATTATTAGATAAATAAATGTTAAGACTTTAAATACTAATCCCCCAAA
TTAAAAATACAAACTCAGTTAAGACTTTTGCTCTAATACAATTTTCCAAAACAAACAAAA
TAGGTATCCAGTGTTTTTCTTATGAAGCTTATTAATAAAAGACAGTATTGGTATGCACAT
TTTAACAGCATGCTTTTTTTGCAGGCAAAGGAGATATGGCTATGTCTAACATTGTGGGAT
CCAACGTGTTTGATATGCTGTGCCTAGGTGTTCCGTGGTTTATTAAAACTGCATTTATAA
ACACATCTGCTCCTGTAGAAGTGAACAGTAGAGGACTAACTTACATAACCATCTTTCTCA
ACATTTCGATTATTTTTCTTCTCTTAGCAGTTCACCTCAATGGCTGGAAACTAGACAGAA
AGTTGGGAATAGTCTGCCTGTTATTATACTTGGGGCTTGCTACATTATCAGTTTTATATG
AACTTGGAATTCTTGGAAATAATAAAATAAGGGGCTGTGGAGATTAACGTTAATAATGTT
ATGTGGAAAATGTGAATGATGGGGAGTGGCAGAGAAGGAAAATTCCATTTCTTCATTTAA
GTCAAATAAAAAATATTCTGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAATTTCACTAAATCTAATATTTTAAATAATATTCATTTGAAATGTGCATTAAATCA
TAATTAACCATGTTAGAATGAAAAGCCACAAATAATCTACATACCTTATTGAAAAATGGT
TTAATAAATAATTATTATTAGATAAATAAATGTTAAGACTTTAAATACTAATCCCCCAAA
TTAAAAATACAAACTCAGTTAAGACTTTTGCTCTAATACAATTTTCCAAAACAAACAAAA
TAGGTATCCAGTGTTTTTCTTATGAAGCTTATTAATAAAAGACAGTATTGGTATGCACAT
TTTAACAGCATGCTTTTTTTGCAGGCAAAGGAGATATGGCTATGTCTAACATTGTGGGAT
CCAACGTGTTTGATATGCTGTGCCTAGGTGTTCCGTGGTTTATTAAAACTGCATTTATAA
ACACATCTGCTCCTGTAGAAGTGAACAGTAGAGGACTAACTTACATAACCATCTTTCTCA
ACATTTCGATTATTTTTCTTCTCTTAGCAGTTCACCTCAATGGCTGGAAACTAGACAGAA
AGTTGGGAATAGTCTGCCTGTTATTATACTTGGGGCTTGCTACATTATCAGTTTTATATG
AACTTGGAATTCTTGGAAATAATAAAATAAGGGGCTGTGGAGATTAACGTTAATAATGTT
ATGTGGAAAATGTGAATGATGGGGAGTGGCAGAGAAGGAAAATTCCATTTCTTCATTTAA
GTCAAATAAAAAATATTCTGAACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-744, gnl|bosTau2|chr10 (43065110-43064360)
               

               
               2-744, gnl|Hg17|chr15 (46221167-46221938)
               

               
               2-744, gnl|Mm7|chr2 (124828488-124829238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-744, gnl|bosTau2|chr10 (43065110-43064360)
               

               
               2-744, gnl|Hg17|chr15 (46221167-46221938)
               

               
               2-744, gnl|Mm7|chr2 (124828488-124829238)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.314416)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               mgm (0.180343)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	2-744, gnl\|bosTau2\|chr10 (43065110-43064360)
	2-744, gnl\|Hg17\|chr15 (46221167-46221938)
	2-744, gnl\|Mm7\|chr2 (124828488-124829238)

	fco (0.314416)
	fce (0.271592)
	col (0.195008)
	mgm (0.180343)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	pgl (0.118483)