Non-Coding RNA Search

Ss1.1-ruio23_l3.5

Sequence:


               
               TAAAACTCAGATCTTGAAATGCCATTTTGTCAAGATAGTCAGTGTTTTTAGAAAAATCTG
CTTAAGTTGTCACAGAAGAGAGTCACCAGTTGCCTGAATCAAAGGAAAAGACTGCTTCCA
AAGATGAAGAATATATAATATAGTAAGATACAGAATTCTAAGCCAAGTGTGTGAGTATAT
GTATATTCCATATTATTGGTACATATGTGTTCATATATGAATCTGTATATATGTGTGTAT
TTGTATACACACAAATGATATGCCCTTCATCCATAGTTGTTTTTATTTTTCCCCAGTTGA
GAAATTTGTGACATGCTGTTATTCCTTTTCCCTCAGATATCATAGTGAATAAAACCCAGT
CTCAAAGGTTTCAATTTTTCATGAAAACCACCGTGTGGACATGTGTGGTTTTATATACAC
ACATATATGGCAAATACATATACACACACAATCTTGTCTTTAGTGCTAATGCAAGTTGGA
TCATGAAAACCATGTAGGTGAAGTACCGTGTATTTCTGTCTGTGCTTGGAACTTACTGTA
AAATGTTATGTATCTGGAATATATTTTGTGGTTTGTCTAATATCTTTATAAAGGCAACTC
TGGGAAGAATTCAAACTGAATTGGTTTCATCGAAATACTAGAGATATGGGGGCCATGTTA
CCTGCGATTGGAGCCTTATCTTTGTATAGTGAAATTTGCATTTCTATGTTAACATTCAGA
TTGTTTTATATGTTAATATGGTGGCAGGAATCCCTAATAAAAATACTCTGGGGAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACTCAGATCTTGAAATGCCATTTTGTCAAGATAGTCAGTGTTTTTAGAAAAATCTG
CTTAAGTTGTCACAGAAGAGAGTCACCAGTTGCCTGAATCAAAGGAAAAGACTGCTTCCA
AAGATGAAGAATATATAATATAGTAAGATACAGAATTCTAAGCCAAGTGTGTGAGTATAT
GTATATTCCATATTATTGGTACATATGTGTTCATATATGAATCTGTATATATGTGTGTAT
TTGTATACACACAAATGATATGCCCTTCATCCATAGTTGTTTTTATTTTTCCCCAGTTGA
GAAATTTGTGACATGCTGTTATTCCTTTTCCCTCAGATATCATAGTGAATAAAACCCAGT
CTCAAAGGTTTCAATTTTTCATGAAAACCACCGTGTGGACATGTGTGGTTTTATATACAC
ACATATATGGCAAATACATATACACACACAATCTTGTCTTTAGTGCTAATGCAAGTTGGA
TCATGAAAACCATGTAGGTGAAGTACCGTGTATTTCTGTCTGTGCTTGGAACTTACTGTA
AAATGTTATGTATCTGGAATATATTTTGTGGTTTGTCTAATATCTTTATAAAGGCAACTC
TGGGAAGAATTCAAACTGAATTGGTTTCATCGAAATACTAGAGATATGGGGGCCATGTTA
CCTGCGATTGGAGCCTTATCTTTGTATAGTGAAATTTGCATTTCTATGTTAACATTCAGA
TTGTTTTATATGTTAATATGGTGGCAGGAATCCCTAATAAAAATACTCTGGGGAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-309, + strand, RNAz p=0.99967

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-309, + strand, RNAz p=0.99967

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               164-309, AJ693991 KN261 Bos taurus cDNA clone KN261-042_M07, mRNA sequence 
(emb|AJ693991.1|), blast E-value=3.99931e-42, identity=90.41% 
               

               
               164-308, AJ709154 CMPD01 Homo sapiens cDNA clone CMPD04501, mRNA sequence 
(emb|AJ709154.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-308, BX089823 Soares ovary tumor NbHOT Homo sapiens cDNA clone 
(emb|BX089823.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-308, zu46c04.r1 Soares ovary tumor NbHOT Homo sapiens cDNA clone 
(gb|AA402220.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-301, CH3#052_D10T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF408085.1|), blast E-value=0, identity=94.2% 
               

               
               164-309, LB02224.CR_L18 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE241953.1|), 
blast E-value=3.99931e-42, identity=90.41%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               164-309, AJ693991 KN261 Bos taurus cDNA clone KN261-042_M07, mRNA sequence 
(emb|AJ693991.1|), blast E-value=3.99931e-42, identity=90.41% 
               

               
               164-308, AJ709154 CMPD01 Homo sapiens cDNA clone CMPD04501, mRNA sequence 
(emb|AJ709154.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-308, BX089823 Soares ovary tumor NbHOT Homo sapiens cDNA clone 
(emb|BX089823.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-308, zu46c04.r1 Soares ovary tumor NbHOT Homo sapiens cDNA clone 
(gb|AA402220.1|), blast E-value=5e-32, identity=87.59% 
               

               
               164-301, CH3#052_D10T3 Canine heart normalized cDNA Library in pBluescript 
(gb|CF408085.1|), blast E-value=0, identity=94.2% 
               

               
               164-309, LB02224.CR_L18 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE241953.1|), 
blast E-value=3.99931e-42, identity=90.41%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-779, gnl|bosTau2|chr8 (42172275-42173037)
               

               
               1-779, gnl|Hg17|chr9 (83089888-83089091)
               

               
               1-779, gnl|Mm7|chr4 (73595653-73596396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr8 (42172275-42173037)
               

               
               1-779, gnl|Hg17|chr9 (83089888-83089091)
               

               
               1-779, gnl|Mm7|chr4 (73595653-73596396)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	164-309, AJ693991 KN261 Bos taurus cDNA clone KN261-042_M07, mRNA sequence (emb\|AJ693991.1\|), blast E-value=3.99931e-42, identity=90.41%
	164-308, AJ709154 CMPD01 Homo sapiens cDNA clone CMPD04501, mRNA sequence (emb\|AJ709154.1\|), blast E-value=5e-32, identity=87.59%
	164-308, BX089823 Soares ovary tumor NbHOT Homo sapiens cDNA clone (emb\|BX089823.1\|), blast E-value=5e-32, identity=87.59%
	164-308, zu46c04.r1 Soares ovary tumor NbHOT Homo sapiens cDNA clone (gb\|AA402220.1\|), blast E-value=5e-32, identity=87.59%
	164-301, CH3#052_D10T3 Canine heart normalized cDNA Library in pBluescript (gb\|CF408085.1\|), blast E-value=0, identity=94.2%
	164-309, LB02224.CR_L18 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb\|EE241953.1\|), blast E-value=3.99931e-42, identity=90.41%

	1-779, gnl\|bosTau2\|chr8 (42172275-42173037)
	1-779, gnl\|Hg17\|chr9 (83089888-83089091)
	1-779, gnl\|Mm7\|chr4 (73595653-73596396)

	sme (0.305437)
	fty (0.17584)
	rec (0.17307)
	bfe (0.149858)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)