Non-Coding RNA Search

Ss1.1-ruio23_n1.5

Sequence:


               
               CTGATAGTCCATCCTGCTACTCCTGAAGTTCTCTTTCTTTGCGATAACTAAAGAACTAGG
ATGTTTAGAGTTCATGAAATAATCTTTAAACTCAATTTTAAAAAGTGACATTCTCATAAA
AACTAAGTTTAAAAAGCCTAATTCCATGAAAAGCCTTCATTTAAAAACTGAAGACTATTC
TCAGTTAACTAAAGTAGCTGGAATTGGAACACTTTACAGAAATTGTAAAGAATATAGGTT
AAACTTCGTAATGGCAGTCCTACTTACTGACCAACTGTTCAGCTCTTTTTGACCAGGATG
GTTGTAAATTAAGGAAAATATCTTTAGGCTCTACATCCAATCCAAGAGGGCTCTAATTAC
TTAAAAGCATATAGTCCACAGTTATAATAATTTTCATTTTTTCCATAAAATAAGCATTAT
GATTGCACACTCCTTCTATTGTCTGAATTTATGTAAGAGGTATAGCTTGCTTAAAATATA
TATGTAAAGTTATATTTTCTTAAAAACATGGATGTTTGCAACCAGTGCTTTCAAAGAGAG
TATTATCATGTATTCTCTGTTTTACAATGTTTTCATGAAGACTGTGTCATTATATCAGAG
GCTTCTGATTATCAAATCGATAACCAGTTTTTTAACTGCCTGTATGTACCAGATTTGTGA
ACTAATTAAAAAAAAAACAGAAACACAAACTATGAATAAAATGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATAGTCCATCCTGCTACTCCTGAAGTTCTCTTTCTTTGCGATAACTAAAGAACTAGG
ATGTTTAGAGTTCATGAAATAATCTTTAAACTCAATTTTAAAAAGTGACATTCTCATAAA
AACTAAGTTTAAAAAGCCTAATTCCATGAAAAGCCTTCATTTAAAAACTGAAGACTATTC
TCAGTTAACTAAAGTAGCTGGAATTGGAACACTTTACAGAAATTGTAAAGAATATAGGTT
AAACTTCGTAATGGCAGTCCTACTTACTGACCAACTGTTCAGCTCTTTTTGACCAGGATG
GTTGTAAATTAAGGAAAATATCTTTAGGCTCTACATCCAATCCAAGAGGGCTCTAATTAC
TTAAAAGCATATAGTCCACAGTTATAATAATTTTCATTTTTTCCATAAAATAAGCATTAT
GATTGCACACTCCTTCTATTGTCTGAATTTATGTAAGAGGTATAGCTTGCTTAAAATATA
TATGTAAAGTTATATTTTCTTAAAAACATGGATGTTTGCAACCAGTGCTTTCAAAGAGAG
TATTATCATGTATTCTCTGTTTTACAATGTTTTCATGAAGACTGTGTCATTATATCAGAG
GCTTCTGATTATCAAATCGATAACCAGTTTTTTAACTGCCTGTATGTACCAGATTTGTGA
ACTAATTAAAAAAAAAACAGAAACACAAACTATGAATAAAATGGAGTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               47-708, gnl|bosTau2|chr15 (8258421-8257755)
               

               
               47-708, gnl|Hg17|chr11 (111397476-111398507)
               

               
               47-708, gnl|Mm7|chr9 (50642273-50641345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-708, gnl|bosTau2|chr15 (8258421-8257755)
               

               
               47-708, gnl|Hg17|chr11 (111397476-111398507)
               

               
               47-708, gnl|Mm7|chr9 (50642273-50641345)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tra (0.492368)
               

               
               fcc (0.39557)
               

               
               kid (0.259471)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               fcc (0.39557)
               

               
               kid (0.259471)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	47-708, gnl\|bosTau2\|chr15 (8258421-8257755)
	47-708, gnl\|Hg17\|chr11 (111397476-111398507)
	47-708, gnl\|Mm7\|chr9 (50642273-50641345)

	tra (0.492368)
	fcc (0.39557)
	kid (0.259471)
	eye (0.170503)
	mga (0.160205)
	lyg (0.133103)
	ret (0.128733)