Non-Coding RNA Search

Ss1.1-ruio23_p17.5

Sequence:


               
               GGGGGACTCAGGGGGAAGAATGACTACAGCCAGCAGTGCCCATAATCCTCAGAGCACAGT
CGACTTGGGTGCCCAGTACATCACCTGCACTCCTCATTTTGCCAAAAAACATCAAAGTTT
TTATGATGAACTGTTGGCTCATGGCGTTTTGAAGCCTCTGACCTCTCCTATTGAGGGAAT
GGTGAACAAAGAAGGAGACTGTAACTTTGTGGCACCTCAAGGAGTTTCTTCAATTATTAA
CCATTACTTGAAAGAATCAGGTGCCGATATCTACTTCAGACAATGTGTGACCCAGATCAA
CCTGAGAAATGACAAGTGGGAAGTCTCCAAGGAAACAGGCTCCCCAGAGCAGTTTGATAT
TGTTGTCCTCACAATGCCAGCTCCTCAGATTCTGCAGCTTCGGGGAGACATTGAAAACTT
AATTAGTGAATGCCAAAGGCAGCAACTGGAGTCTGTGAGCTACTCCTCTCGCTACGCACT
GGGCCTCTTTTATGAAGCTGGCACGAAGATTGATGTCCCTTGGGCTGGGCAGTACATCAC
TAGTAATCCCTGCATTCGCTTCATCTGCATTGATAATAAGAAACGCAATATAGGTCAGTA
CCCCCATTATTTCCCTTAAATACAGTAACCGTGGTGGGTGTATATCATGAAAAATGCTGT
TTAATTGAGTGTTGCCATTCTGAACAGAGCAAGCATTTAACTTCAAGCCACAGGGGATAA
AATTTAATGTCACATTTGGCCAATAATAAAATACACAGTGAAACCAGCGAAGTTTTTCAG
AAAATCATTCACCACATGGTTTGTATTACTGAGTTTATGAAAATAGTGTCAGAAGGTTTA
AGATTTCAAAATGGCCCAAGTTCTATTGCCTTAATATGAATCCATCTATATGCAAATTTA
TCTCTCATCATTTGTTCTTTGGTGGGTTTTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGACTCAGGGGGAAGAATGACTACAGCCAGCAGTGCCCATAATCCTCAGAGCACAGT
CGACTTGGGTGCCCAGTACATCACCTGCACTCCTCATTTTGCCAAAAAACATCAAAGTTT
TTATGATGAACTGTTGGCTCATGGCGTTTTGAAGCCTCTGACCTCTCCTATTGAGGGAAT
GGTGAACAAAGAAGGAGACTGTAACTTTGTGGCACCTCAAGGAGTTTCTTCAATTATTAA
CCATTACTTGAAAGAATCAGGTGCCGATATCTACTTCAGACAATGTGTGACCCAGATCAA
CCTGAGAAATGACAAGTGGGAAGTCTCCAAGGAAACAGGCTCCCCAGAGCAGTTTGATAT
TGTTGTCCTCACAATGCCAGCTCCTCAGATTCTGCAGCTTCGGGGAGACATTGAAAACTT
AATTAGTGAATGCCAAAGGCAGCAACTGGAGTCTGTGAGCTACTCCTCTCGCTACGCACT
GGGCCTCTTTTATGAAGCTGGCACGAAGATTGATGTCCCTTGGGCTGGGCAGTACATCAC
TAGTAATCCCTGCATTCGCTTCATCTGCATTGATAATAAGAAACGCAATATAGGTCAGTA
CCCCCATTATTTCCCTTAAATACAGTAACCGTGGTGGGTGTATATCATGAAAAATGCTGT
TTAATTGAGTGTTGCCATTCTGAACAGAGCAAGCATTTAACTTCAAGCCACAGGGGATAA
AATTTAATGTCACATTTGGCCAATAATAAAATACACAGTGAAACCAGCGAAGTTTTTCAG
AAAATCATTCACCACATGGTTTGTATTACTGAGTTTATGAAAATAGTGTCAGAAGGTTTA
AGATTTCAAAATGGCCCAAGTTCTATTGCCTTAATATGAATCCATCTATATGCAAATTTA
TCTCTCATCATTTGTTCTTTGGTGGGTTTTTTCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857760|ref|XP_616301.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857760|ref|XP_616301.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               116-263, gnl|bosTau2|chr26 (35391097-35390950)
               

               
               116-263, gnl|Hg17|chr10 (90331448-90331301)
               

               
               116-263, gnl|Mm7|chr19 (33091280-33091133)
               


               
               420-936, gnl|bosTau2|chr26 (35194749-35194230)
               

               
               420-936, gnl|Hg17|chr10 (90112462-90111949)
               

               
               420-936, gnl|Mm7|chr19 (32903867-32903354)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-263, gnl|bosTau2|chr26 (35391097-35390950)
               

               
               116-263, gnl|Hg17|chr10 (90331448-90331301)
               

               
               116-263, gnl|Mm7|chr19 (33091280-33091133)
               


               
               420-936, gnl|bosTau2|chr26 (35194749-35194230)
               

               
               420-936, gnl|Hg17|chr10 (90112462-90111949)
               

               
               420-936, gnl|Mm7|chr19 (32903867-32903354)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               kid (0.129735)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)

	116-263, gnl\|bosTau2\|chr26 (35391097-35390950)
	116-263, gnl\|Hg17\|chr10 (90331448-90331301)
	116-263, gnl\|Mm7\|chr19 (33091280-33091133)

	420-936, gnl\|bosTau2\|chr26 (35194749-35194230)
	420-936, gnl\|Hg17\|chr10 (90112462-90111949)
	420-936, gnl\|Mm7\|chr19 (32903867-32903354)