Non-Coding RNA Search

Ss1.1-ruio24_m8.5

Sequence:


               
               CCTGTGTTTTAATAATAGTGTAATTCACACTGAAAGTTAAGAACCACTGGCTAGACCACA
ACCTCCAGACATTGGGGATACAGATGAGCAATGAGTATTTATATTTATCCCAGGAAAATG
CAGCCAGAATTAAGAATAACTCATCTACACCTGCTGTTTCAATCTATAGTCAAGAACACC
AAGTCTAGTGAGATTATTTTTCCGGATTATCAAGTTTTATGCTATTTTTGTGGTTTCCAA
AACAAGGAAATAGGATGTCTTCTAGACCACACAGCTGTACGGGACAGGGATGATTGAAGA
TGCCAACAGGTTCAGCCTCCAGTGTTACCCATTAGGGTTTTTTCCTCCCTGTTAATGTTA
AAGTCTGTTTACTTCATTTTCATTCACCTTAAGGACAAAAATTGGTTCTTGGGGTGAAAA
AAAATCTTAATGCAGCGGGTTGTGGTCCTCCATATTTTCAACCCTACTCAGTAAAACCTT
ATTCCTTAGTATTAACTTCTTTCATTAGGGAGAAATGTAATTTACAGTTACATTTATTAA
TTAAATTTAATTTTTCTCATAGGGCAAGGGGGTGATAATGAAAAAAAAGTTGAGAAAAAC
TGCTTTTGTGTTCTTAGTGCTGTATGTAGTTATTAGTAGCTATTTGTTAAGATGTTTGGA
CCTAGGTAATGTTTACAACATAAATTCCTGGCTACTCCTTATGCTGTAATTTTACTTTGT
CCATTATGGACAGTATCAGAAAACATACTTGTCACTACCATTTTACTTGGATTGTAGCAG
CGAATTTAGCTTATTAATGGATGCAATGGAAAGAAAAATATTTTGTTAAATTTTTAAATG
CTCAGTTCTCAAATATATTGTGGGGATGAGTATCTCAGGGTAGGTAAACAGTTACTGAAT
TTTTTTTTTCCTCAAAGTCAGTAACTTTTTTGATATCTACTAATAAATGTTAATATCTTT
GAAATTGAATTCCAAAATCTCATTGGAGTATGATAAAGAGCATACTATCAAGCTTAAGGC
TTAAATGAAAGATGCTGTTTCGTGTATACTTTCAATAGACATTTGATTTCTTTTAAAAAT
AAAGTTATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGTGTTTTAATAATAGTGTAATTCACACTGAAAGTTAAGAACCACTGGCTAGACCACA
ACCTCCAGACATTGGGGATACAGATGAGCAATGAGTATTTATATTTATCCCAGGAAAATG
CAGCCAGAATTAAGAATAACTCATCTACACCTGCTGTTTCAATCTATAGTCAAGAACACC
AAGTCTAGTGAGATTATTTTTCCGGATTATCAAGTTTTATGCTATTTTTGTGGTTTCCAA
AACAAGGAAATAGGATGTCTTCTAGACCACACAGCTGTACGGGACAGGGATGATTGAAGA
TGCCAACAGGTTCAGCCTCCAGTGTTACCCATTAGGGTTTTTTCCTCCCTGTTAATGTTA
AAGTCTGTTTACTTCATTTTCATTCACCTTAAGGACAAAAATTGGTTCTTGGGGTGAAAA
AAAATCTTAATGCAGCGGGTTGTGGTCCTCCATATTTTCAACCCTACTCAGTAAAACCTT
ATTCCTTAGTATTAACTTCTTTCATTAGGGAGAAATGTAATTTACAGTTACATTTATTAA
TTAAATTTAATTTTTCTCATAGGGCAAGGGGGTGATAATGAAAAAAAAGTTGAGAAAAAC
TGCTTTTGTGTTCTTAGTGCTGTATGTAGTTATTAGTAGCTATTTGTTAAGATGTTTGGA
CCTAGGTAATGTTTACAACATAAATTCCTGGCTACTCCTTATGCTGTAATTTTACTTTGT
CCATTATGGACAGTATCAGAAAACATACTTGTCACTACCATTTTACTTGGATTGTAGCAG
CGAATTTAGCTTATTAATGGATGCAATGGAAAGAAAAATATTTTGTTAAATTTTTAAATG
CTCAGTTCTCAAATATATTGTGGGGATGAGTATCTCAGGGTAGGTAAACAGTTACTGAAT
TTTTTTTTTCCTCAAAGTCAGTAACTTTTTTGATATCTACTAATAAATGTTAATATCTTT
GAAATTGAATTCCAAAATCTCATTGGAGTATGATAAAGAGCATACTATCAAGCTTAAGGC
TTAAATGAAAGATGCTGTTTCGTGTATACTTTCAATAGACATTTGATTTCTTTTAAAAAT
AAAGTTATTTTT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-340, gnl|bosTau2|chr9 (18530962-18530600)
               

               
               2-340, gnl|Hg17|chr6 (116672305-116672690)
               


               
               393-607, gnl|bosTau2|chr9 (18530508-18530302)
               

               
               393-607, gnl|Hg17|chr6 (116672760-116672969)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-340, gnl|bosTau2|chr9 (18530962-18530600)
               

               
               2-340, gnl|Hg17|chr6 (116672305-116672690)
               


               
               393-607, gnl|bosTau2|chr9 (18530508-18530302)
               

               
               393-607, gnl|Hg17|chr6 (116672760-116672969)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               col (0.390016)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               jca (0.11396)

	2-340, gnl\|bosTau2\|chr9 (18530962-18530600)
	2-340, gnl\|Hg17\|chr6 (116672305-116672690)

	393-607, gnl\|bosTau2\|chr9 (18530508-18530302)
	393-607, gnl\|Hg17\|chr6 (116672760-116672969)

	col (0.390016)
	kid (0.259471)
	tra (0.246184)
	sin (0.174948)
	mcp (0.170648)
	jca (0.11396)