Non-Coding RNA Search

Ss1.1-ruio25_b14.5

Sequence:


               
               ATTTGCTAGAAATAGCACCCTCAAATGTCACCTGACTGCATGCCAAACTGGAGTGGGGGC
AAAAAAGGGAAGAAAGAAGCTTTATGAATGTCAGGTCTGTAACAGTGTGTTTAACAGCTG
GGACCAGTTTAAAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTTT
GTGTGACTTGTGGTTTATGCAAGGAAATGAATTAAGGAGACATCTCAGTGATATTCATAA
TATTTCAGAGCGTCTAGTAACCGAAGAATTTCTTTCAGTAGAAACACGTGTACAAACTGA
ACCTGTGACATCAATGACTATTATAGAACAAGTTGGGAAGGTGCATGTGTTACCTTTGCT
TCAGGTTCAGGTGGATTCAGCACAAGTGACTGTGGAACAGGTTCATCCAGATCTGCTCCA
GGACAGCCAAGTGCAGGATTCACATATGAGTGAGCTTCCAGAGCAGGTCCAAGTAAGTTA
TCTAGAAGTGGGTCGAATCCAGACTGAAGAAGGTACTGAAGTACATGTAGAGGAGCTGCA
TGTTGAACGGGTAAATCAGATGCCAATGGAAGTACAAACTGAGCTTCTAGAAGCAGACTT
GGATCAAGTGACTCCTGAAATCATGAACCAGGAGGAGAGAGAGCCTACCCAAGCAGATGC
TGCTGAGGCTGCCAGAGAAGATCACGAAGATGCTGAGGGTTTAGAGACCAAATCAACAGT
GGATTCCCAAGCTGAAAAGGCAGGAAATGAGAACAGAACACCTATGCCGGTTTTAGAATG
AAATAACGAATATATTTTTAAATATGTGTTGGGTTTTTGAACTGATGATGGGCAGTGTGA
CTGTCCTTAAGCTAACAGATGCGTGGACCAAAGTTAAACTCTCCTGTTGTGCTGACCTGT
TTTTGTTGAAACAGACTGGTTTTCTTCTACTTAGTGCCACAGAGGAGGGATCTTTCCCAT
AAGTGAGTGGGAAGCTTTGAGAAGTATATTTCTGGAAAACTTAAATGGATTATATTCTTA
TTATATAGTTGGGTACGAATGTATCTATTTTCGTTGTGGTAAGGGTTCTCCCTTTTCTTT
CCCAGGTCATGTCCTTCCTCAAGTTTTTTTTTTTTCATGTTGTAAAATCAAACAGTAAAA
TCATTAGGATACATAAACGTGTATTCTAATGCATGTTAGAAAATTTGAATATATAGGAAA
CAAGGCTGCATGAAGAAAAGTGCATTGTAACTGTGCAGTTAAAAATTTTGGCTTCTGGCT
TTCTTTTGTTAGAACAACGTTCTTGTCTACCCTGATAGTCACAGATGTCATCGCTGCAAC
AGAAACAGAGTGGTGGCAAATTTCTAGAATGTTTAAAAAAAAAAAAAAAAAACCACACAC
ACATGTGCCTTTTCAGAACCAACTAAACTTCTATAAAGCATTTCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGCTAGAAATAGCACCCTCAAATGTCACCTGACTGCATGCCAAACTGGAGTGGGGGC
AAAAAAGGGAAGAAAGAAGCTTTATGAATGTCAGGTCTGTAACAGTGTGTTTAACAGCTG
GGACCAGTTTAAAGATCACTTGGTAATACACACTGGAGATAAACCCAACCATTGTACTTT
GTGTGACTTGTGGTTTATGCAAGGAAATGAATTAAGGAGACATCTCAGTGATATTCATAA
TATTTCAGAGCGTCTAGTAACCGAAGAATTTCTTTCAGTAGAAACACGTGTACAAACTGA
ACCTGTGACATCAATGACTATTATAGAACAAGTTGGGAAGGTGCATGTGTTACCTTTGCT
TCAGGTTCAGGTGGATTCAGCACAAGTGACTGTGGAACAGGTTCATCCAGATCTGCTCCA
GGACAGCCAAGTGCAGGATTCACATATGAGTGAGCTTCCAGAGCAGGTCCAAGTAAGTTA
TCTAGAAGTGGGTCGAATCCAGACTGAAGAAGGTACTGAAGTACATGTAGAGGAGCTGCA
TGTTGAACGGGTAAATCAGATGCCAATGGAAGTACAAACTGAGCTTCTAGAAGCAGACTT
GGATCAAGTGACTCCTGAAATCATGAACCAGGAGGAGAGAGAGCCTACCCAAGCAGATGC
TGCTGAGGCTGCCAGAGAAGATCACGAAGATGCTGAGGGTTTAGAGACCAAATCAACAGT
GGATTCCCAAGCTGAAAAGGCAGGAAATGAGAACAGAACACCTATGCCGGTTTTAGAATG
AAATAACGAATATATTTTTAAATATGTGTTGGGTTTTTGAACTGATGATGGGCAGTGTGA
CTGTCCTTAAGCTAACAGATGCGTGGACCAAAGTTAAACTCTCCTGTTGTGCTGACCTGT
TTTTGTTGAAACAGACTGGTTTTCTTCTACTTAGTGCCACAGAGGAGGGATCTTTCCCAT
AAGTGAGTGGGAAGCTTTGAGAAGTATATTTCTGGAAAACTTAAATGGATTATATTCTTA
TTATATAGTTGGGTACGAATGTATCTATTTTCGTTGTGGTAAGGGTTCTCCCTTTTCTTT
CCCAGGTCATGTCCTTCCTCAAGTTTTTTTTTTTTCATGTTGTAAAATCAAACAGTAAAA
TCATTAGGATACATAAACGTGTATTCTAATGCATGTTAGAAAATTTGAATATATAGGAAA
CAAGGCTGCATGAAGAAAAGTGCATTGTAACTGTGCAGTTAAAAATTTTGGCTTCTGGCT
TTCTTTTGTTAGAACAACGTTCTTGTCTACCCTGATAGTCACAGATGTCATCGCTGCAAC
AGAAACAGAGTGGTGGCAAATTTCTAGAATGTTTAAAAAAAAAAAAAAAAAACCACACAC
ACATGTGCCTTTTCAGAACCAACTAAACTTCTATAAAGCATTTCTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843959|ref|XP_581855.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843959|ref|XP_581855.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               330-489, - strand, RNAz p=0.855174
               

               
               1072-1262, + strand, RNAz p=0.998284

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-489, - strand, RNAz p=0.855174
               

               
               1072-1262, + strand, RNAz p=0.998284

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC035875, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC035875, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               91-1428, gnl|bosTau2|chr9 (4165694-4167032)
               

               
               91-1428, gnl|Hg17|chr5 (43210302-43211648)
               

               
               91-1428, gnl|Mm7|chr13_random (420819-422126)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-1428, gnl|bosTau2|chr9 (4165694-4167032)
               

               
               91-1428, gnl|Hg17|chr5 (43210302-43211648)
               

               
               91-1428, gnl|Mm7|chr13_random (420819-422126)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               bla (0.373042)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.373042)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	330-489, - strand, RNAz p=0.855174
	1072-1262, + strand, RNAz p=0.998284

	91-1428, gnl\|bosTau2\|chr9 (4165694-4167032)
	91-1428, gnl\|Hg17\|chr5 (43210302-43211648)
	91-1428, gnl\|Mm7\|chr13_random (420819-422126)

	bla (0.373042)
	fce (0.271592)
	mgp (0.230681)
	tes (0.207814)
	mgm (0.180343)
	rec (0.17307)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	spc (0.113366)
	cty (0.10408)