Ss1.1-ruio25_d24.5.5
|
CATTTCCCCTCCGGTTTAGTTTATTGAAATCTATCTCTCATAATATCTAGTATCCACTAC
TTTTGGATTAATAGAATACTTACATACGCCAGTGCATACCTACCCAAAAGACTGCATTTA
CTGTTATAGTGTCACTAATAACATGTCTTGATTTTTTTTTTCTTTTTGGTCTTTTTAGGG
CCGCACTTGCGGCATATGGAAGTTCGCAGGCTAGGGGGTGAATCTGAGCTGTAGCTGCCC
GCCTTTGCCACAGCCACACGGGATCTGAGCTGCATCTGTGATTTATATACCACAGCTCAT
GGCAACACCGGATCTGTAACCACTGAGTGGGACCAGGGAATCAAACCCGCATCCTCATGG
ATACTAGTCAGGTTCGTTACCCCTGAGCCACAATGGGAACTCCTAACTGTTTTGATTAAT
CTCAGTGTAATTTATATTAGAGAGACCGTCAAAGTATTAACATCGCTTTTCTTTCTTTTT
CTAAGAAAGCAATTCAAATGATGGTAACTGATAACATTTATTAAAATGACATTGTTATTG
ATGCAACTGGAGAGAAACTGCCACATCTTCTCACTAAGCAGTCTGACTTAACCTGTTGGG
AATCTAAGGGAAGTTGTTTTAGGGTGATCAGCGTGTCTGTAGCCAGAGCCTTGAGCTCTA
CGTGCATGCATGTGCAGCAAAGAAACTTTAGAGTTTAGGTTGGTTGAGGAAGAGAATGCT
CTAGCACTTTGAGGGCTTTATAACATGCTGCTTTTAAGAGGAAAAAGTGTAGTTGATACT
CAGTGCATCTCCAGACATAGTAAGGGGTTGCTCTGAATAACCAATCAGGTGATTTTTTTT
TCTATCGCTTTGTTTTATGCAAAAATATTGTTAAATTCTATAATGACATGAATCTTTTTA
GAAAGATGATACACTTAAACTATTTTATGTAAGAACTGACAGAGGAATTTGCTTTGTATA
ACGGCAAGCTGGCTTTAAGAAAGCATTGTTTCAAATTTACTAAAGTCCAAAATTATAGAG
ATATGTTAATAGATGTATGTGCAACTAGATATGGACAATTGTATTTTTTTAAATAAATAT
TTTTAACAAAATGAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATTTCCCCTCCGGTTTAGTTTATTGAAATCTATCTCTCATAATATCTAGTATCCACTAC
TTTTGGATTAATAGAATACTTACATACGCCAGTGCATACCTACCCAAAAGACTGCATTTA
CTGTTATAGTGTCACTAATAACATGTCTTGATTTTTTTTTTCTTTTTGGTCTTTTTAGGG
CCGCACTTGCGGCATATGGAAGTTCGCAGGCTAGGGGGTGAATCTGAGCTGTAGCTGCCC
GCCTTTGCCACAGCCACACGGGATCTGAGCTGCATCTGTGATTTATATACCACAGCTCAT
GGCAACACCGGATCTGTAACCACTGAGTGGGACCAGGGAATCAAACCCGCATCCTCATGG
ATACTAGTCAGGTTCGTTACCCCTGAGCCACAATGGGAACTCCTAACTGTTTTGATTAAT
CTCAGTGTAATTTATATTAGAGAGACCGTCAAAGTATTAACATCGCTTTTCTTTCTTTTT
CTAAGAAAGCAATTCAAATGATGGTAACTGATAACATTTATTAAAATGACATTGTTATTG
ATGCAACTGGAGAGAAACTGCCACATCTTCTCACTAAGCAGTCTGACTTAACCTGTTGGG
AATCTAAGGGAAGTTGTTTTAGGGTGATCAGCGTGTCTGTAGCCAGAGCCTTGAGCTCTA
CGTGCATGCATGTGCAGCAAAGAAACTTTAGAGTTTAGGTTGGTTGAGGAAGAGAATGCT
CTAGCACTTTGAGGGCTTTATAACATGCTGCTTTTAAGAGGAAAAAGTGTAGTTGATACT
CAGTGCATCTCCAGACATAGTAAGGGGTTGCTCTGAATAACCAATCAGGTGATTTTTTTT
TCTATCGCTTTGTTTTATGCAAAAATATTGTTAAATTCTATAATGACATGAATCTTTTTA
GAAAGATGATACACTTAAACTATTTTATGTAAGAACTGACAGAGGAATTTGCTTTGTATA
ACGGCAAGCTGGCTTTAAGAAAGCATTGTTTCAAATTTACTAAAGTCCAAAATTATAGAG
ATATGTTAATAGATGTATGTGCAACTAGATATGGACAATTGTATTTTTTTAAATAAATAT
TTTTAACAAAATGAAAAAAAAAAAAAAAAAAAAAAA
|
|
14-153, gnl|bosTau2|chr16 (1484706-1484561) |
|
14-153, gnl|canFam2|chr38 (5070311-5070661) |
|
14-153, gnl|echTel1|scaffold_259832 (7966-7628) |
|
14-153, gnl|hg17|chr1 (202309348-202309730) |
|
14-153, gnl|Hg17|chr1 (202309554-202309426) |
|
14-153, gnl|mm7|chr1 (131927485-131927156) |
|
14-153, gnl|monDom2|scaffold_13 (7407298-7407671) |
|
14-153, gnl|oryCun1|scaffold_130819 (19462-19114) |
|
14-153, gnl|panTro1|chr1 (185267340-185267723) |
|
14-153, gnl|rheMac2|chr1 (164806553-164806175) |
|
14-153, gnl|rn3|chr13 (44927569-44927229) |
| |
|
408-1094, gnl|bosTau2|chr16 (1484570-1483889) |
|
408-1094, gnl|Hg17|chr1 (202309435-202308728) |
|
408-1094, gnl|Mm7|chr1 (131927417-131928080) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-153, gnl|bosTau2|chr16 (1484706-1484561) |
|
14-153, gnl|canFam2|chr38 (5070311-5070661) |
|
14-153, gnl|echTel1|scaffold_259832 (7966-7628) |
|
14-153, gnl|hg17|chr1 (202309348-202309730) |
|
14-153, gnl|Hg17|chr1 (202309554-202309426) |
|
14-153, gnl|mm7|chr1 (131927485-131927156) |
|
14-153, gnl|monDom2|scaffold_13 (7407298-7407671) |
|
14-153, gnl|oryCun1|scaffold_130819 (19462-19114) |
|
14-153, gnl|panTro1|chr1 (185267340-185267723) |
|
14-153, gnl|rheMac2|chr1 (164806553-164806175) |
|
14-153, gnl|rn3|chr13 (44927569-44927229) |
| |
|
408-1094, gnl|bosTau2|chr16 (1484570-1483889) |
|
408-1094, gnl|Hg17|chr1 (202309435-202308728) |
|
408-1094, gnl|Mm7|chr1 (131927417-131928080) |
|
ova (0.645661) |
|
thg (0.633955) |
|
ski (0.586941) |
|
cmu (0.55918) |
|
lyg (0.399308) |
|
aor (0.390549) |
|
kid (0.389206) |
|
ret (0.3862) |
|
sag (0.36543) |
|
gul (0.355177) |
|
mga (0.32041) |
|
csk (0.281492) |
|
ese (0.253004) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
csp (0.161186) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
sug (0.127291) |
|
tra (0.123092) |
|
jca (0.11396) |
|
spc (0.113366) |
|
ova (0.645661) |
|
thg (0.633955) |
|
ski (0.586941) |
|
cmu (0.55918) |
|
lyg (0.399308) |
|
aor (0.390549) |
|
kid (0.389206) |
|
ret (0.3862) |
|
sag (0.36543) |
|
gul (0.355177) |
|
mga (0.32041) |
|
csk (0.281492) |
|
ese (0.253004) |
|
clu (0.239292) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fbs (0.175346) |
|
csp (0.161186) |
|
liv (0.146284) |
|
lin (0.145603) |
|
spl (0.143184) |
|
sug (0.127291) |
|
tra (0.123092) |
|
jca (0.11396) |
|
spc (0.113366) |
