Non-Coding RNA Search

Ss1.1-ruio25_j10.5

Sequence:


               
               TATAAAATCTGTCCTACCGTAACAATACAGTTAACTAGCTGTTTTACTGCACCAGTGTTC
TAGGCAATTTCAGTATGTTATGAACAAATCAAAGAATGTTTACTTTCTGCAAACTGGTGA
ATTATAGAAAGCAATCCAGATGTGGTTTACTCTGCCACAGCTAATGTCGCTCACTTCATT
TAATGGGGTCACTTTTTACCTGTCACTAATAATGGAATTAATGGAAACACTTGATAAATG
AAACTGTACTATTAAGTACAATAGTAAAATTTTCCCCATTGTATCATAAAATTGACACAA
ACTAATATCAGGATCTATCTAAATGACCCGAGAGGGCTAAAAGCTAACTGTAAACTGCTT
TCACTTTCAAATCTGACAAATCTTGTTTATATGGTATATAAAACTTTGTTTTCATCAAGT
TTCATGGGGGGTTTTATATTAAAGAAATTAAGACTACACTATTTAAATAAAAGTTTCTTG
TTTCTGACTTATTAGAGCTCTAAAGTTTATGAGGCCTGCTTCTCTGAATATTCTATTTGT
TTTTTTGTTTGTTTTTGAGGTTAGTCTCATTTTCACACTGACATATTTCAAAAGTTTATT
ATTTATAAGACTTAGACGATATACTTCAGCAATGGGGGAACTTTTTTAAAATGGAAAATG
TGTTTTGGATTTCTTGTACCAATGGGTGATATTGGTTGAATGAGTTTTTTCCATATAAAA
AAATTTCTTGTTTACCAGTTGTTCTTGGACTGCTCTTAGCAGTTAATAAGAGTAAATCTG
TATTGGTGATGGAATATGGCATAATGAACTGAATGGGAGATTTGATTAGAAATGGGATTT
TCTCTTGTTCTATATAAAACACAACTGCCAGCACTTGATATTCTGTATGTAAATGACATT
TAAGCTTTTGTGCCCTTTTTAAGATTAAAATGCCATCTTCAAAGAGGAAAACCATGAAGG
AGAAGACAAAGCCAAAATAGCATAAAGTAAAAGTTGACATTACCTCTTTTCACTCACAAT
GCCCATTTAAAAAATGGAGTCTAGGCTTAACTGATTTTCTTGTTTAATAAGTTTTTAAAA
CCCATTGTGCTGCAGTTTTTTTCCCTCTCAAGCTTCTTGAAAATATGTGATTTACAATTT
ATTTATCCATTACTTTAAGCAAAACTAAATATAAATTTAAGCACTATTTTAAAATATAAA
TTTATTGGACAAAGAGGGGGATTTAAAAAAAAAAAAAAAAAGGACTACAACAACTACTTC
AGGAAAAGAAAGCAACAGAGGTCTCAGATTGTCTAAGCATCCTTGAGGTCCAGGGCCTTT
TTTCGTAAACTGTCTTAGAAAGATACTTGTGAAAAGTATTACCAGTGTCTTTTAAGCATA
GAGATGATTAGGCTAGATTTTAAAATTCACAGGATTTAATGCATTAGAGGAGACTTTTCA
ATCCATTTGGCTACATGTGTCTGTAAGCACATTATGTACACAGTACAGTTGTGGCCACTT
TAGATGACTATAGGAAAAAAAAAAAAAAAACTCTGGGTAAAGCTGTATTAAAAGGATAAT
TTCTTGCCTGAACTGCTAAGTCACTTTTCTTCAGGGCACCAAAACTTAGGTCACTTTTCC
ATAGCTTATAAGCTATGTTTTTATTTTACTTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAAATCTGTCCTACCGTAACAATACAGTTAACTAGCTGTTTTACTGCACCAGTGTTC
TAGGCAATTTCAGTATGTTATGAACAAATCAAAGAATGTTTACTTTCTGCAAACTGGTGA
ATTATAGAAAGCAATCCAGATGTGGTTTACTCTGCCACAGCTAATGTCGCTCACTTCATT
TAATGGGGTCACTTTTTACCTGTCACTAATAATGGAATTAATGGAAACACTTGATAAATG
AAACTGTACTATTAAGTACAATAGTAAAATTTTCCCCATTGTATCATAAAATTGACACAA
ACTAATATCAGGATCTATCTAAATGACCCGAGAGGGCTAAAAGCTAACTGTAAACTGCTT
TCACTTTCAAATCTGACAAATCTTGTTTATATGGTATATAAAACTTTGTTTTCATCAAGT
TTCATGGGGGGTTTTATATTAAAGAAATTAAGACTACACTATTTAAATAAAAGTTTCTTG
TTTCTGACTTATTAGAGCTCTAAAGTTTATGAGGCCTGCTTCTCTGAATATTCTATTTGT
TTTTTTGTTTGTTTTTGAGGTTAGTCTCATTTTCACACTGACATATTTCAAAAGTTTATT
ATTTATAAGACTTAGACGATATACTTCAGCAATGGGGGAACTTTTTTAAAATGGAAAATG
TGTTTTGGATTTCTTGTACCAATGGGTGATATTGGTTGAATGAGTTTTTTCCATATAAAA
AAATTTCTTGTTTACCAGTTGTTCTTGGACTGCTCTTAGCAGTTAATAAGAGTAAATCTG
TATTGGTGATGGAATATGGCATAATGAACTGAATGGGAGATTTGATTAGAAATGGGATTT
TCTCTTGTTCTATATAAAACACAACTGCCAGCACTTGATATTCTGTATGTAAATGACATT
TAAGCTTTTGTGCCCTTTTTAAGATTAAAATGCCATCTTCAAAGAGGAAAACCATGAAGG
AGAAGACAAAGCCAAAATAGCATAAAGTAAAAGTTGACATTACCTCTTTTCACTCACAAT
GCCCATTTAAAAAATGGAGTCTAGGCTTAACTGATTTTCTTGTTTAATAAGTTTTTAAAA
CCCATTGTGCTGCAGTTTTTTTCCCTCTCAAGCTTCTTGAAAATATGTGATTTACAATTT
ATTTATCCATTACTTTAAGCAAAACTAAATATAAATTTAAGCACTATTTTAAAATATAAA
TTTATTGGACAAAGAGGGGGATTTAAAAAAAAAAAAAAAAAGGACTACAACAACTACTTC
AGGAAAAGAAAGCAACAGAGGTCTCAGATTGTCTAAGCATCCTTGAGGTCCAGGGCCTTT
TTTCGTAAACTGTCTTAGAAAGATACTTGTGAAAAGTATTACCAGTGTCTTTTAAGCATA
GAGATGATTAGGCTAGATTTTAAAATTCACAGGATTTAATGCATTAGAGGAGACTTTTCA
ATCCATTTGGCTACATGTGTCTGTAAGCACATTATGTACACAGTACAGTTGTGGCCACTT
TAGATGACTATAGGAAAAAAAAAAAAAAAACTCTGGGTAAAGCTGTATTAAAAGGATAAT
TTCTTGCCTGAACTGCTAAGTCACTTTTCTTCAGGGCACCAAAACTTAGGTCACTTTTCC
ATAGCTTATAAGCTATGTTTTTATTTTACTTTAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               78-306, - strand, RNAz p=0.849884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-306, - strand, RNAz p=0.849884

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1653, gnl|bosTau2|chr19 (28207824-28206173)
               

               
               1-1653, gnl|Hg17|chr17 (46398492-46396204)
               

               
               1-1653, gnl|Mm7|chr11 (94232017-94233565)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1653, gnl|bosTau2|chr19 (28207824-28206173)
               

               
               1-1653, gnl|Hg17|chr17 (46398492-46396204)
               

               
               1-1653, gnl|Mm7|chr11 (94232017-94233565)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               tbr (0.308356)
               

               
               pla (0.267344)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-1653, gnl\|bosTau2\|chr19 (28207824-28206173)
	1-1653, gnl\|Hg17\|chr17 (46398492-46396204)
	1-1653, gnl\|Mm7\|chr11 (94232017-94233565)

	rec (0.346141)
	tbr (0.308356)
	pla (0.267344)
	tes (0.207814)
	aor (0.195274)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	nca (0.136874)
	ste (0.135208)
	kid (0.129735)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)