Non-Coding RNA Search

Ss1.1-ruio25_l8.5

Sequence:


               
               GGCGCCCGGAGCCGGAGCAGGCGCGGGAGCTGTGGGCCCGCCCCCAGAAAACCCTTTTTT
GAGAGCATCTCCTGGCACCATCGGAAATGTCTTCCATAAGTGGGAAAGTCCAAACTGTTT
TGGGTCCTGTGGAGCCCAGCCAGCTGGGCCGCACGCTGACCCATGAACATCTGACAATGA
CCTTTGACTGTTCTTACTACCCACCTCCTCCAAGCCACGAAGTGATCTCCAAGGAACCCA
TCCGAATGAAGAATTTATTCTGGATCCAGAAAAACCCTTATTCCCATAAAGAGAATCTGC
AGTTGAATCAGGAGACAGAAGCCATCAAGGAAGAACTGTTGGATTTTAAAGCCAATGGCG
GGGGGGCTTTGGTGGAAAATACAACCACTGGGATCAGCCGAGACGTGCAGACGTTGAAGC
GGCTTGCGGAAGAGACAGGCGTGCAAATCATATCCGGAGCTGGGTTTTACGTGGATGCAA
CTCACTCTTCGGAGACCAGAGCCATGTCAGTGGAGCAGCTGACTAATGTCCTCGTTAATG
AAATTCTCCACGGAGCTGATGGAACCAGTATCAAGTGTGGTGTTATTGGAGAAATCGGTT
GCTCCTGGCCTCTGACTGAGAGTGAAAGAAAGGTTCTACAGGCAACAGCTCATGCCCAGG
TTCAGCTTGGCTGTCCTGTGATTATTCATCCAGGGAGAAATCCAAGTGCCCCATTTCAGA
TTATCCGAGTGTTGCAAGAAGCGGGCGCGGACATCTCCAAAACAGTCATGTCGCACCTTG
ACAGGACTATTCTTGATAAGAAGGAACTACTGGAGTTTGCTCAATTTGGCTGTTACTTGG
AATATGATCTCTTTGGTACTGAACTTTTTCATTATCAGTTCAACCCGGATATTGACATGC
CCAATGATAATAAAAGAATTAAGAGGGTGCGTCTTCTGGTGGCCGAGGGCTATGAAGATC
GGATTCTGATGGCTCATGACATACATACGAAACACCGGCTGACAAAATATGGAGGTCATG
GCTACTCACATATACTCACCAACATTGTTCCTAAAATGTTGCTTAGAGGTATAACTCAGG
ACGCACTTGATAAGATACTGATAGAGAACCCTAAGCAGTGGCTAACTTTCAAATAGAATG
GTTGTTAGAAATTCACACCTTGAGGAGAAAGCTTGCAGGGGAACGTACATACGTACAGAG
ATTGCAAACCCGCTGTAAGATGTTCATCAGAGCTACATACAACTAATGACAGAGCACTTC
CTTTTGATGAGAATTAGAAGAGTTTTGCATTAGAAGAGTTACGCCTTCTCAGAAACTGGC
TGGCTATTACATCTTTGGTAGATTCCTGAGCCTAATAGAACCCTATTGTTTTTCCTTTAC
AAAATAAATACAAAACTACTCGTTGCCAAACAATGATTTACAGCCCATATCCCCTTAGTG
GAGTTTGGCGTTCCTTTTGTTTTCTTAATCTATCAAGAGCACTACTTGAGAAAATTTAAA
GTGTTTCTAGTTAAATTACCCCCTTCTGGAGCAATCTAATGTTTCTTGTAATATTGATGA
TTCTACTAATTATCCTGCTGTTCTTTAATTAATGCTTAATGAGTAATATGGCACTTTAAA
ATAGCTTCTGCAACAAGGGAAGTTAAATTTTGAGACTTTTTTTTCAAAGGATACTGAATA
CCCTTACTGATTCACAATGGGAACAATCTTGTGGAAGGTTAATCATATGCTGTTCGTCTA
TTTATGGAGATTTATAATAAATCAGTTTTGTTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCCCGGAGCCGGAGCAGGCGCGGGAGCTGTGGGCCCGCCCCCAGAAAACCCTTTTTT
GAGAGCATCTCCTGGCACCATCGGAAATGTCTTCCATAAGTGGGAAAGTCCAAACTGTTT
TGGGTCCTGTGGAGCCCAGCCAGCTGGGCCGCACGCTGACCCATGAACATCTGACAATGA
CCTTTGACTGTTCTTACTACCCACCTCCTCCAAGCCACGAAGTGATCTCCAAGGAACCCA
TCCGAATGAAGAATTTATTCTGGATCCAGAAAAACCCTTATTCCCATAAAGAGAATCTGC
AGTTGAATCAGGAGACAGAAGCCATCAAGGAAGAACTGTTGGATTTTAAAGCCAATGGCG
GGGGGGCTTTGGTGGAAAATACAACCACTGGGATCAGCCGAGACGTGCAGACGTTGAAGC
GGCTTGCGGAAGAGACAGGCGTGCAAATCATATCCGGAGCTGGGTTTTACGTGGATGCAA
CTCACTCTTCGGAGACCAGAGCCATGTCAGTGGAGCAGCTGACTAATGTCCTCGTTAATG
AAATTCTCCACGGAGCTGATGGAACCAGTATCAAGTGTGGTGTTATTGGAGAAATCGGTT
GCTCCTGGCCTCTGACTGAGAGTGAAAGAAAGGTTCTACAGGCAACAGCTCATGCCCAGG
TTCAGCTTGGCTGTCCTGTGATTATTCATCCAGGGAGAAATCCAAGTGCCCCATTTCAGA
TTATCCGAGTGTTGCAAGAAGCGGGCGCGGACATCTCCAAAACAGTCATGTCGCACCTTG
ACAGGACTATTCTTGATAAGAAGGAACTACTGGAGTTTGCTCAATTTGGCTGTTACTTGG
AATATGATCTCTTTGGTACTGAACTTTTTCATTATCAGTTCAACCCGGATATTGACATGC
CCAATGATAATAAAAGAATTAAGAGGGTGCGTCTTCTGGTGGCCGAGGGCTATGAAGATC
GGATTCTGATGGCTCATGACATACATACGAAACACCGGCTGACAAAATATGGAGGTCATG
GCTACTCACATATACTCACCAACATTGTTCCTAAAATGTTGCTTAGAGGTATAACTCAGG
ACGCACTTGATAAGATACTGATAGAGAACCCTAAGCAGTGGCTAACTTTCAAATAGAATG
GTTGTTAGAAATTCACACCTTGAGGAGAAAGCTTGCAGGGGAACGTACATACGTACAGAG
ATTGCAAACCCGCTGTAAGATGTTCATCAGAGCTACATACAACTAATGACAGAGCACTTC
CTTTTGATGAGAATTAGAAGAGTTTTGCATTAGAAGAGTTACGCCTTCTCAGAAACTGGC
TGGCTATTACATCTTTGGTAGATTCCTGAGCCTAATAGAACCCTATTGTTTTTCCTTTAC
AAAATAAATACAAAACTACTCGTTGCCAAACAATGATTTACAGCCCATATCCCCTTAGTG
GAGTTTGGCGTTCCTTTTGTTTTCTTAATCTATCAAGAGCACTACTTGAGAAAATTTAAA
GTGTTTCTAGTTAAATTACCCCCTTCTGGAGCAATCTAATGTTTCTTGTAATATTGATGA
TTCTACTAATTATCCTGCTGTTCTTTAATTAATGCTTAATGAGTAATATGGCACTTTAAA
ATAGCTTCTGCAACAAGGGAAGTTAAATTTTGAGACTTTTTTTTCAAAGGATACTGAATA
CCCTTACTGATTCACAATGGGAACAATCTTGTGGAAGGTTAATCATATGCTGTTCGTCTA
TTTATGGAGATTTATAATAAATCAGTTTTGTTGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820933|ref|XP_594412.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820933|ref|XP_594412.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-183, - strand, RNAz p=0.816229

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-183, - strand, RNAz p=0.816229

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               44-518, gnl|bosTau2|chr13 (20189395-20188921)
               

               
               44-518, gnl|Hg17|chr10 (16566328-16566821)
               

               
               44-518, gnl|Mm7|chr2 (12917310-12917775)
               


               
               924-1776, gnl|bosTau2|chr13 (20154038-20153205)
               

               
               924-1776, gnl|Hg17|chr10 (16593049-16593876)
               

               
               924-1776, gnl|Mm7|chr2 (12940013-12940827)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-518, gnl|bosTau2|chr13 (20189395-20188921)
               

               
               44-518, gnl|Hg17|chr10 (16566328-16566821)
               

               
               44-518, gnl|Mm7|chr2 (12917310-12917775)
               


               
               924-1776, gnl|bosTau2|chr13 (20154038-20153205)
               

               
               924-1776, gnl|Hg17|chr10 (16593049-16593876)
               

               
               924-1776, gnl|Mm7|chr2 (12940013-12940827)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               kid (1.16762)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.16762)
               

               
               cki (0.330469)
               

               
               bfe (0.299715)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               hea (0.204499)
               

               
               tbr (0.154178)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	44-518, gnl\|bosTau2\|chr13 (20189395-20188921)
	44-518, gnl\|Hg17\|chr10 (16566328-16566821)
	44-518, gnl\|Mm7\|chr2 (12917310-12917775)

	924-1776, gnl\|bosTau2\|chr13 (20154038-20153205)
	924-1776, gnl\|Hg17\|chr10 (16593049-16593876)
	924-1776, gnl\|Mm7\|chr2 (12940013-12940827)

	kid (1.16762)
	cki (0.330469)
	bfe (0.299715)
	ssp (0.271039)
	ste (0.270416)
	hea (0.204499)
	tbr (0.154178)
	ret (0.128733)
	thg (0.126791)
	eru (0.120048)
	ldo (0.0970026)