Ss1.1-ruio26_d2.5.5
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ACTACAATTAGTATGATAGTGAAATAAAGAGAAGGGTAGCTTTGCTTGACACCAAAGATG
ATCCAGTCATTTTTTATATGACCTAAAACCAGGACTGTGCATCATTCATTAAAAATAATC
AATAAGGTATAAAATAGTTAATGCAAATGACTGTCAAAGTTTAAAAATAGAACCCTTTTT
GCCTTCTTATAAAGGAATGTACTTAAAGTGACTGTGATTTGATCATGGAATGTATATTGA
TGTAAGTTTTGTATGTACAGTAGTTTTGATTTGGGCAAATAAAACCTGTGGGAAAAGTTA
ACCAAAAAGGAAAGAACTAGCATTTTCATACAAATATGTATCTTGGTTTTATCTAAACAT
AGTATAGATTTATTTAAATCAAGGATATATTGTTCATTTAAAAAATTACATGGGAGTTCC
TGCTGTGGCACAGTGGGTTAATGATCTGGCTTGTCTCTGTGGTGGCACTGGTTCGACCTC
CAGCCCAGTGGTGTTGCTGCAGCTGTGGCATAGCTTGCAACTGCAGCTCAGATTTGATCC
CTGGCGCATGAACTTTCACAGGCTATGGGTATGGACGAAAAAGAAAAAAAAAAATATGTA
TTTTATGTAGTTATGTATTTTGTATGTAAATATGTAGTTTAGTATGTTCCGACTTTATTT
TTAAGCAAGCTTGTTTGTCCACTGAATTATTTATGCTTAACTTTCATTTATACTTTAGTG
TTATATGGACAAAATCTCTATTGTAGTTTCTAAGTTTCACTGTATAACTAACTTGCAACC
AAATATTGAATTACTCTTTGGAAGTACATGCTTTTGCCAGCAGTTTTGAATGTATTTTCA
AATTCATCTCTTTCTTACTAGACTGTGAGCTCCTTGTGAACAAGGATGTTATATAAGTTA
TAATAACAACTTTAATGCCTAGAAAGGTGACAGGCAGACTAATTCCTTTATTGAAATGAA
TTGAAGCACCTGGATTATTAAATGAATATTACAGTATTCTATGATGCAGGCTGAATGTAG
TAGAAAAATTCACTAATTTTTTCAAAGACAGAATGTATATTAAGGGAATTCTCTGGCTAA
TTTTTAAAGATTTGGAAAACAAATACCCGTAACATTTTCTTTTTCTTAAAATTAACATAG
CATTTTGGGCTGGGGGAAAAATGTAATTGTAATGTATACATGTAAGGATAACCTGACCCC
CTTGCTGTACAGTGGGAAAATAAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ACTACAATTAGTATGATAGTGAAATAAAGAGAAGGGTAGCTTTGCTTGACACCAAAGATG
ATCCAGTCATTTTTTATATGACCTAAAACCAGGACTGTGCATCATTCATTAAAAATAATC
AATAAGGTATAAAATAGTTAATGCAAATGACTGTCAAAGTTTAAAAATAGAACCCTTTTT
GCCTTCTTATAAAGGAATGTACTTAAAGTGACTGTGATTTGATCATGGAATGTATATTGA
TGTAAGTTTTGTATGTACAGTAGTTTTGATTTGGGCAAATAAAACCTGTGGGAAAAGTTA
ACCAAAAAGGAAAGAACTAGCATTTTCATACAAATATGTATCTTGGTTTTATCTAAACAT
AGTATAGATTTATTTAAATCAAGGATATATTGTTCATTTAAAAAATTACATGGGAGTTCC
TGCTGTGGCACAGTGGGTTAATGATCTGGCTTGTCTCTGTGGTGGCACTGGTTCGACCTC
CAGCCCAGTGGTGTTGCTGCAGCTGTGGCATAGCTTGCAACTGCAGCTCAGATTTGATCC
CTGGCGCATGAACTTTCACAGGCTATGGGTATGGACGAAAAAGAAAAAAAAAAATATGTA
TTTTATGTAGTTATGTATTTTGTATGTAAATATGTAGTTTAGTATGTTCCGACTTTATTT
TTAAGCAAGCTTGTTTGTCCACTGAATTATTTATGCTTAACTTTCATTTATACTTTAGTG
TTATATGGACAAAATCTCTATTGTAGTTTCTAAGTTTCACTGTATAACTAACTTGCAACC
AAATATTGAATTACTCTTTGGAAGTACATGCTTTTGCCAGCAGTTTTGAATGTATTTTCA
AATTCATCTCTTTCTTACTAGACTGTGAGCTCCTTGTGAACAAGGATGTTATATAAGTTA
TAATAACAACTTTAATGCCTAGAAAGGTGACAGGCAGACTAATTCCTTTATTGAAATGAA
TTGAAGCACCTGGATTATTAAATGAATATTACAGTATTCTATGATGCAGGCTGAATGTAG
TAGAAAAATTCACTAATTTTTTCAAAGACAGAATGTATATTAAGGGAATTCTCTGGCTAA
TTTTTAAAGATTTGGAAAACAAATACCCGTAACATTTTCTTTTTCTTAAAATTAACATAG
CATTTTGGGCTGGGGGAAAAATGTAATTGTAATGTATACATGTAAGGATAACCTGACCCC
CTTGCTGTACAGTGGGAAAATAAAAAAAAAAAAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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156-367, gnl|bosTau2|chr24 (33768485-33768701) |
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599-1133, gnl|bosTau2|chr24 (33768764-33769306) |
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599-1133, gnl|canFam2|chr10 (6489963-6490427) |
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599-1133, gnl|dasNov1|scaffold_40300 (6422-6907) |
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599-1133, gnl|echTel1|scaffold_281395 (2543-3010) |
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599-1133, gnl|hg17|chr12 (58468857-58469334) |
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599-1133, gnl|Hg17|chr12 (58468897-58469393) |
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599-1133, gnl|loxAfr1|scaffold_741 (64973-65458) |
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599-1133, gnl|mm7|chr10 (124713649-124713231) |
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599-1133, gnl|monDom2|scaffold_71 (517061-517549) |
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599-1133, gnl|oryCun1|scaffold_206464 (62594-63072) |
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599-1133, gnl|panTro1|chr10 (59739424-59739901) |
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599-1133, gnl|rheMac2|chr11 (56926485-56927292) |
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599-1133, gnl|rn3|chr7 (65224023-65223590) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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156-367, gnl|bosTau2|chr24 (33768485-33768701) |
| |
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599-1133, gnl|bosTau2|chr24 (33768764-33769306) |
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599-1133, gnl|canFam2|chr10 (6489963-6490427) |
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599-1133, gnl|dasNov1|scaffold_40300 (6422-6907) |
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599-1133, gnl|echTel1|scaffold_281395 (2543-3010) |
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599-1133, gnl|hg17|chr12 (58468857-58469334) |
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599-1133, gnl|Hg17|chr12 (58468897-58469393) |
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599-1133, gnl|loxAfr1|scaffold_741 (64973-65458) |
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599-1133, gnl|mm7|chr10 (124713649-124713231) |
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599-1133, gnl|monDom2|scaffold_71 (517061-517549) |
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599-1133, gnl|oryCun1|scaffold_206464 (62594-63072) |
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599-1133, gnl|panTro1|chr10 (59739424-59739901) |
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599-1133, gnl|rheMac2|chr11 (56926485-56927292) |
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599-1133, gnl|rn3|chr7 (65224023-65223590) |
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fat (0.294855) |
|
kid (0.259471) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
liv (0.146284) |
|
cst (0.140036) |
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ova (0.129132) |
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clu (0.119646) |
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pgl (0.118483) |
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med (0.116252) |
|
fat (0.294855) |
|
kid (0.259471) |
|
sto (0.179824) |
|
mcp (0.170648) |
|
liv (0.146284) |
|
cst (0.140036) |
|
ova (0.129132) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
med (0.116252) |
