Non-Coding RNA Search

Ss1.1-ruio26_j5.5

Sequence:


               
               GGAGTGTCGGCTGGCTGCAAAGCTCCTGGCGAAGCACAGAAGCTTGCAGTGGGACAAAGT
GCTGCGGCTGGAGGAGGTGCAGGCCAAACTCGGGGTCAGTTTGGAAGAAATGCTGTTGAT
CACAGAGGATACGCTTCACCCTGAGCCCTATAGCCCTGAGGAGGTCTGCCAGTGTCTGGG
AATCAGCCTGCAGGAACTCAAGACCCAAATCCTGAGTCCAAACACTCAAGATGTGCTCAC
CTTCAAACTTTACCAACGGGCAAAGCACGTGTACAGCGAGGCTGCGAGAGTGCTCCAGTT
TAAGAAGATATGTGAAGAAGCACCTGACGACATGGTCCAGCTGCTGGGGGAGTTGATGAA
CCAGAGCCATGTGAGCTGCCGAGACATGTATGAGTGTAGTTGCCCTGAGCTGGACCAGCT
GGTGGACATCTGTCGGAAATTTGGGGCTCAAGGGTCACGACTCACTGGAGCAGGATGGGG
AGGCTGCACAGTATCGATAGTACTTGCTGACAAGTTGCCCAGCTTCTTAGCAAATGTGCA
TGAAGCTTATTACCAGAAGAGCGGCCGAAGCTTAGCGCCTGAGAAGCAGAGTTTGTTTGC
TACCAAGCCTGGAGGTGGAGCTTTGGTTTTCCTTGAGGCCTAAACAATGTAAAAAAATCT
CCGAGAAACTATTTAGAGCATTTAGGAACTGGCAGGACTTCTTATGCCACAGTAAATCAA
TCCCCTTTCTGTTTTGTATTATGATGAACGGTTGCTATTATCAAGATGTATTTCCAAAGA
AACGGCTATGCTTCATAACGATTATTTTTCCATCTTAAAATGTTTTCTACCAATAAGAGC
CAAAATTATGCTTGGACAGATCTCCTCAGGATGATTTACTGAAATTTACTGATTTAAGAT
TTTTAAAGACAAATGGATAAAGACCATTAATACTGACCTCATAGATTGTACTTGAATTAA
ACACACTACTATGATTAAATTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGTCGGCTGGCTGCAAAGCTCCTGGCGAAGCACAGAAGCTTGCAGTGGGACAAAGT
GCTGCGGCTGGAGGAGGTGCAGGCCAAACTCGGGGTCAGTTTGGAAGAAATGCTGTTGAT
CACAGAGGATACGCTTCACCCTGAGCCCTATAGCCCTGAGGAGGTCTGCCAGTGTCTGGG
AATCAGCCTGCAGGAACTCAAGACCCAAATCCTGAGTCCAAACACTCAAGATGTGCTCAC
CTTCAAACTTTACCAACGGGCAAAGCACGTGTACAGCGAGGCTGCGAGAGTGCTCCAGTT
TAAGAAGATATGTGAAGAAGCACCTGACGACATGGTCCAGCTGCTGGGGGAGTTGATGAA
CCAGAGCCATGTGAGCTGCCGAGACATGTATGAGTGTAGTTGCCCTGAGCTGGACCAGCT
GGTGGACATCTGTCGGAAATTTGGGGCTCAAGGGTCACGACTCACTGGAGCAGGATGGGG
AGGCTGCACAGTATCGATAGTACTTGCTGACAAGTTGCCCAGCTTCTTAGCAAATGTGCA
TGAAGCTTATTACCAGAAGAGCGGCCGAAGCTTAGCGCCTGAGAAGCAGAGTTTGTTTGC
TACCAAGCCTGGAGGTGGAGCTTTGGTTTTCCTTGAGGCCTAAACAATGTAAAAAAATCT
CCGAGAAACTATTTAGAGCATTTAGGAACTGGCAGGACTTCTTATGCCACAGTAAATCAA
TCCCCTTTCTGTTTTGTATTATGATGAACGGTTGCTATTATCAAGATGTATTTCCAAAGA
AACGGCTATGCTTCATAACGATTATTTTTCCATCTTAAAATGTTTTCTACCAATAAGAGC
CAAAATTATGCTTGGACAGATCTCCTCAGGATGATTTACTGAAATTTACTGATTTAAGAT
TTTTAAAGACAAATGGATAAAGACCATTAATACTGACCTCATAGATTGTACTTGAATTAA
ACACACTACTATGATTAAATTGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55642851|ref|XP_523196.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642851|ref|XP_523196.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               789-963, gnl|bosTau2|chr2 (45476838-45477014)
               

               
               789-963, gnl|Hg17|chr15 (47407840-47407984)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               789-963, gnl|bosTau2|chr2 (45476838-45477014)
               

               
               789-963, gnl|Hg17|chr15 (47407840-47407984)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	789-963, gnl\|bosTau2\|chr2 (45476838-45477014)
	789-963, gnl\|Hg17\|chr15 (47407840-47407984)

	vin (0.332557)
	cbe (0.239234)
	mas (0.210305)
	sag (0.182715)
	mgm (0.180343)
	rec (0.17307)
	cut (0.169924)
	cje (0.165235)
	tbr (0.154178)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	spc (0.113366)
	ldo (0.0970026)