Non-Coding RNA Search

Ss1.1-ruio27_e5.5

Sequence:


               
               GTTCCTTTGTGGACCCTCCTCTTTGAGGCTTGCATGCTTAAGGATCCCAAACGACTAAGA
AATTTAAAAAAAAAAAAAAAAAAAAAAAGACTGTCATTCATACCATTCACACCTAAAGAC
TGAATTTTATCTGTTTTGAAAATGAACTTCTCCTGCTACACAGAAGTAACAATATGGTAG
TCAGTTTTGTATTTAGAAATGTATTGGTAGCAGGGATGTTTTCATAATTTTCAGAGATTA
TGCATTCTTCATGAATACTTTTGTATTGCTGCTTGCAAATATGCATTTCCAAACTTGAAA
TATAGGTGTGAACAGTGTGTACCAGTTTAAAGCTTTCACTCATTTGTGTTTTTTAATTAA
GGATTTAGATGTTCCCTCTATTATAAACTGGTTTTAAATATTGGACATAATATCAGTTTT
AATACCTGCTTTGCATTTTCACACATGGTCAACTGGGACATGTAAACTTTGTCAAATTTT
ATGCTGTGTGGAATACTAACTACTTTATGTATTTTAACTTAGTTTTAATATTTTCATTTC
TGGGGAAAAGGTCTTTTTTTCACTTCTCATGATAGCTGTTATATATGCTAAATCTTTACA
TACAGAAATATCAGTACTTGAACAAATTCAAAGCACATTGGTTTATTTACCCTTGCTCCT
GCATGGTTTAATAGGTTCAAATTATAATTGATTCACAATTTTAATTATATTTACTTTTTT
AAATGTGTCACTTTCCCATTTTAAAAATCAATCTAGACACCTTACTGGTGTAAGTTGTTT
AAGCTCCATAATCGTTGATAGACACATACTGTCAAGTGAAATAGTTTTATGGGTGTTGGG
TTTTTCCTCCTCTAACAGGGTAGGTTGAACAAATTAATTTGGTTAATGCATAATATTTAA
ATTGCTCTGTAAGATAAGTGGCCACTCAGTATGATTTGTATGTGTGAAGGGTCCCCAATC
AAAATTGTACATCCATAATCAACCCTTTAACCCTTCCTTGTTCTAAAGAAACCAAAGGGC
GCTGAATAGTATGGTAAGCTGGGAAAGAATATATTAGTTTTTGGAATTTGGAAAGCAGAC
GGCTTTAGTTTATAAGGTTGGAACAGTAGCACCATCCATGAAATACAAACCAAAAATTGT
ACTGTTTCTGAATTTCCTATATTGCTATTAATTTTGGTCTTAAGTTAGATACCAAGAAAG
TTTTAAGTATCTTTTACCTCTTCCTCCGTTAGAAGATTAAGTTAATAATGGATTCCTCAA
TCAGGAGCATCACCACTTACTAAAAGCATGGAGAGAATAATCAATAAACAAGTTTTCTAG
GGTTTTTTTTTTTTAAAGTCTTCTGCCACAGTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCTTTGTGGACCCTCCTCTTTGAGGCTTGCATGCTTAAGGATCCCAAACGACTAAGA
AATTTAAAAAAAAAAAAAAAAAAAAAAAGACTGTCATTCATACCATTCACACCTAAAGAC
TGAATTTTATCTGTTTTGAAAATGAACTTCTCCTGCTACACAGAAGTAACAATATGGTAG
TCAGTTTTGTATTTAGAAATGTATTGGTAGCAGGGATGTTTTCATAATTTTCAGAGATTA
TGCATTCTTCATGAATACTTTTGTATTGCTGCTTGCAAATATGCATTTCCAAACTTGAAA
TATAGGTGTGAACAGTGTGTACCAGTTTAAAGCTTTCACTCATTTGTGTTTTTTAATTAA
GGATTTAGATGTTCCCTCTATTATAAACTGGTTTTAAATATTGGACATAATATCAGTTTT
AATACCTGCTTTGCATTTTCACACATGGTCAACTGGGACATGTAAACTTTGTCAAATTTT
ATGCTGTGTGGAATACTAACTACTTTATGTATTTTAACTTAGTTTTAATATTTTCATTTC
TGGGGAAAAGGTCTTTTTTTCACTTCTCATGATAGCTGTTATATATGCTAAATCTTTACA
TACAGAAATATCAGTACTTGAACAAATTCAAAGCACATTGGTTTATTTACCCTTGCTCCT
GCATGGTTTAATAGGTTCAAATTATAATTGATTCACAATTTTAATTATATTTACTTTTTT
AAATGTGTCACTTTCCCATTTTAAAAATCAATCTAGACACCTTACTGGTGTAAGTTGTTT
AAGCTCCATAATCGTTGATAGACACATACTGTCAAGTGAAATAGTTTTATGGGTGTTGGG
TTTTTCCTCCTCTAACAGGGTAGGTTGAACAAATTAATTTGGTTAATGCATAATATTTAA
ATTGCTCTGTAAGATAAGTGGCCACTCAGTATGATTTGTATGTGTGAAGGGTCCCCAATC
AAAATTGTACATCCATAATCAACCCTTTAACCCTTCCTTGTTCTAAAGAAACCAAAGGGC
GCTGAATAGTATGGTAAGCTGGGAAAGAATATATTAGTTTTTGGAATTTGGAAAGCAGAC
GGCTTTAGTTTATAAGGTTGGAACAGTAGCACCATCCATGAAATACAAACCAAAAATTGT
ACTGTTTCTGAATTTCCTATATTGCTATTAATTTTGGTCTTAAGTTAGATACCAAGAAAG
TTTTAAGTATCTTTTACCTCTTCCTCCGTTAGAAGATTAAGTTAATAATGGATTCCTCAA
TCAGGAGCATCACCACTTACTAAAAGCATGGAGAGAATAATCAATAAACAAGTTTTCTAG
GGTTTTTTTTTTTTAAAGTCTTCTGCCACAGTTATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-430, + strand, RNAz p=0.753725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-430, + strand, RNAz p=0.753725

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015640, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015640, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1356, gnl|bosTau2|chr8 (56975704-56974353)
               

               
               1-1356, gnl|Hg17|chr1 (67590887-67589529)
               

               
               1-1356, gnl|Mm7|chr6 (67266182-67267472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1356, gnl|bosTau2|chr8 (56975704-56974353)
               

               
               1-1356, gnl|Hg17|chr1 (67590887-67589529)
               

               
               1-1356, gnl|Mm7|chr6 (67266182-67267472)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               amn (0.835422)
               

               
               vin (0.665115)
               

               
               nms (0.641574)
               

               
               lin (0.582411)
               

               
               spl (0.572738)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               ldo (0.38801)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               vin (0.665115)
               

               
               nms (0.641574)
               

               
               lin (0.582411)
               

               
               spl (0.572738)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               ldo (0.38801)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-1356, gnl\|bosTau2\|chr8 (56975704-56974353)
	1-1356, gnl\|Hg17\|chr1 (67590887-67589529)
	1-1356, gnl\|Mm7\|chr6 (67266182-67267472)

	amn (0.835422)
	vin (0.665115)
	nms (0.641574)
	lin (0.582411)
	spl (0.572738)
	fce (0.543183)
	ece (0.45861)
	ldo (0.38801)
	fbs (0.350693)
	eye (0.341006)
	fco (0.314416)
	ste (0.270416)
	kid (0.259471)
	ret (0.257467)
	thg (0.253582)
	hea (0.204499)
	fcc (0.197785)
	rec (0.17307)
	duo (0.172801)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)