Non-Coding RNA Search

Ss1.1-ruio27_g20.5

Sequence:


               
               TCAGCTAATAAGAAGGGGAGATCCAAAAGTGTCCAGTTATGGAATCTGAGTTAATTTCAC
ATTCGGATTCTACACTATGGACCCCTAACTAATTATAGTATCTTTTTTGTCTATTTAATG
TTTCTCTCAATTAGAGGGTTTTCAAATTCTCCAAATAATAATTTTCTATACCCAGATCTA
TGCTGAGGCATATTTTATAGTATATTGTATTAGTTAAAAATAATCTCTATTTGCCGTATG
TAAGAGCAAGTAGCATCTACTTTTTAAGTGGGAATAACAGTATAATTCGGAGGTATCTAT
CATGAAACAGAGCCTATTTGAAGAGAATTATATCAAACTAATCACAACGAAAAAAGAATA
GCATGAAGCAGGTACTGTTTGGAAGGCAGGTTAACATTTATTGGGAAAATTGTATAGTCA
CTTGTAATTTCACTATCTAGAGATAACCATTATTAACATTTGGTATGTACATCTTCTATT
TTTTTCCTATGCATGCTTTTGTATATATGGCTATTTTCTTTCCATAAAAATGGTATTAAA
CTGTATATACTGTTTTGTCTCCTACATATTTCATATAGAAGTATATTGTTAACATTTTCC
CATGTCAATAAATATTCTTCTATGGCTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTAATAAGAAGGGGAGATCCAAAAGTGTCCAGTTATGGAATCTGAGTTAATTTCAC
ATTCGGATTCTACACTATGGACCCCTAACTAATTATAGTATCTTTTTTGTCTATTTAATG
TTTCTCTCAATTAGAGGGTTTTCAAATTCTCCAAATAATAATTTTCTATACCCAGATCTA
TGCTGAGGCATATTTTATAGTATATTGTATTAGTTAAAAATAATCTCTATTTGCCGTATG
TAAGAGCAAGTAGCATCTACTTTTTAAGTGGGAATAACAGTATAATTCGGAGGTATCTAT
CATGAAACAGAGCCTATTTGAAGAGAATTATATCAAACTAATCACAACGAAAAAAGAATA
GCATGAAGCAGGTACTGTTTGGAAGGCAGGTTAACATTTATTGGGAAAATTGTATAGTCA
CTTGTAATTTCACTATCTAGAGATAACCATTATTAACATTTGGTATGTACATCTTCTATT
TTTTTCCTATGCATGCTTTTGTATATATGGCTATTTTCTTTCCATAAAAATGGTATTAAA
CTGTATATACTGTTTTGTCTCCTACATATTTCATATAGAAGTATATTGTTAACATTTTCC
CATGTCAATAAATATTCTTCTATGGCTTAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-565, - strand, RNAz p=0.823487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-565, - strand, RNAz p=0.823487

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-630, gnl|bosTau2|chr24 (23481971-23482579)
               

               
               9-630, gnl|Hg17|chr18 (20286560-20287493)
               

               
               9-630, gnl|Mm7|chr18 (13342059-13342643)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-630, gnl|bosTau2|chr24 (23481971-23482579)
               

               
               9-630, gnl|Hg17|chr18 (20286560-20287493)
               

               
               9-630, gnl|Mm7|chr18 (13342059-13342643)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               kid (0.259471)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               bfe (0.149858)
               

               
               ret (0.128733)

	9-630, gnl\|bosTau2\|chr24 (23481971-23482579)
	9-630, gnl\|Hg17\|chr18 (20286560-20287493)
	9-630, gnl\|Mm7\|chr18 (13342059-13342643)