Non-Coding RNA Search

Ss1.1-ruio27_i17.5

Sequence:


               
               TTTCATGTAAGTATTTCAATGAGTAGTTCTTTAAAAGTGGTTTCTAAATTAGTTTTTAAA
TTTGTCCTCTAAATGCATGTTCAGTCACAGTATATCAGTATTGTATTTTAAAGGTGCTTA
GCATTGCTTTTTTAAAGGTATGTTTACATATTTTAAATATTCAATTATTTTTTTAAATGC
ACAGGGTATTAAATACAGTGCATAGAATTTTCAGTATCTATATTTGGCATTCTCCTAACA
GCTCTGCAGCAAAGTTTGACATGCTTTTTTGTGTCATGTATTGCAAGGTGTAATATCGTA
GTAGAAAGGTGGACATTCAGAATAAGCAGTTAGAATTCCTAATTACAGCTGAGCTTGTTT
CTTCATTGTAGTTTTCGTGTTCCAAGGCTCCAAGTGAACATTATATACACTACAGTGAGT
TATAGATATACACAGCCATGGTGGGTCTTTCCCTCAATGTTAATTTTCTGGGTAGGCAGC
ATACTTAAAAGAACTTAAACTTTTTTGTCTTACCCAAAGTAAATGTTTTCTAAAAGTCAC
AGAAGTGATAGAAAATAAACTTGGTGATACGGTCCTGCATTAGAGTTTCTAATTTTGAGG
CCTACCAACTTGTGTTTCATCTTTATATCCTGTCAAAATATATACGTAATACGTAATCAT
GTGAATATGAGAAAGATGCAGTTTAATTTTATACTATGTTTTTTAAAAAGTTTAAAAAAG
TGTGTATATATGTATATATATATAGATATATATAACTTAATGTATGTCCTTGTTACAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATGTAAGTATTTCAATGAGTAGTTCTTTAAAAGTGGTTTCTAAATTAGTTTTTAAA
TTTGTCCTCTAAATGCATGTTCAGTCACAGTATATCAGTATTGTATTTTAAAGGTGCTTA
GCATTGCTTTTTTAAAGGTATGTTTACATATTTTAAATATTCAATTATTTTTTTAAATGC
ACAGGGTATTAAATACAGTGCATAGAATTTTCAGTATCTATATTTGGCATTCTCCTAACA
GCTCTGCAGCAAAGTTTGACATGCTTTTTTGTGTCATGTATTGCAAGGTGTAATATCGTA
GTAGAAAGGTGGACATTCAGAATAAGCAGTTAGAATTCCTAATTACAGCTGAGCTTGTTT
CTTCATTGTAGTTTTCGTGTTCCAAGGCTCCAAGTGAACATTATATACACTACAGTGAGT
TATAGATATACACAGCCATGGTGGGTCTTTCCCTCAATGTTAATTTTCTGGGTAGGCAGC
ATACTTAAAAGAACTTAAACTTTTTTGTCTTACCCAAAGTAAATGTTTTCTAAAAGTCAC
AGAAGTGATAGAAAATAAACTTGGTGATACGGTCCTGCATTAGAGTTTCTAATTTTGAGG
CCTACCAACTTGTGTTTCATCTTTATATCCTGTCAAAATATATACGTAATACGTAATCAT
GTGAATATGAGAAAGATGCAGTTTAATTTTATACTATGTTTTTTAAAAAGTTTAAAAAAG
TGTGTATATATGTATATATATATAGATATATATAACTTAATGTATGTCCTTGTTACAATG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-297, gnl|bosTau2|chr2 (51301163-51301465)
               

               
               1-297, gnl|Hg17|chr2 (203676362-203676662)
               

               
               1-297, gnl|Mm7|chr1 (60404123-60404414)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr2 (51301163-51301465)
               

               
               1-297, gnl|Hg17|chr2 (203676362-203676662)
               

               
               1-297, gnl|Mm7|chr1 (60404123-60404414)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mga (0.160205)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	1-297, gnl\|bosTau2\|chr2 (51301163-51301465)
	1-297, gnl\|Hg17\|chr2 (203676362-203676662)
	1-297, gnl\|Mm7\|chr1 (60404123-60404414)