Non-Coding RNA Search

Ss1.1-ruio27_o18.5

Sequence:


               
               TGATGTTTGGATTGTAGCAGCAGCAACCTCTTCACCCAACTTGTGGAGGCGGCTTTCCTC
AAGACGAGGGATCCTTCTTCCTATGGAGGCTTAGAGAGGAGGGCTGAGGGACGTCCGCAC
CGAATTTCCATCCCAGAGACGGATACGAGCGTGTGCGTCCATTCCTGTTCTTCTGCGGCT
CCGGGGCCTGCAGAACTAACCTCCAAGACCAGCTGATTTGTAAATACTTGACTCATGGGA
TTGCTAGACAGACTTTCAGGCCTGCTTGGCCTAAAGAAGAAGGAGGTTCATGTTTTGTGC
CTTGGGCTGGATAATAGTGGCAAAACAACAATCATTAATAAACTTAAACCTTCAAATGCT
CAGTCTCAAGATATAGTCCCAACGATAGGATTCAGCATAGAGAAATTCAAATCATCCAGT
TTGTCTTTTACTGTGTTTGACATGTCAGGCCAAGGAAGATACAGAAATCTCTGGGAACAC
TATTATAAAGAAGGACAAGCCATTATTTTTGTCATTGATAGTAGTGATAGATTAAGAATG
GTTGTGGCCAAAGAAGAACTTGATACTCTTCTGAATCATCCAGATATTAAGCACCGCCGA
ATACCAATCTTATTCTTTGCGAACAAAATGGATCTAAGAGATGCAGTGACATCTGTAAAA
GTGTCTCAATTGCTGTGTTTAGAGAACATCAAAGATAAACCATGGCATATTTGTGCTAGT
GATGCCATAAAAGGAGAAGGACTGCAAGAAGGTGTAGACTGGCTTCAAGATCAGATCCAG
GCTGTGAAGACATGAAAACATAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGTTTGGATTGTAGCAGCAGCAACCTCTTCACCCAACTTGTGGAGGCGGCTTTCCTC
AAGACGAGGGATCCTTCTTCCTATGGAGGCTTAGAGAGGAGGGCTGAGGGACGTCCGCAC
CGAATTTCCATCCCAGAGACGGATACGAGCGTGTGCGTCCATTCCTGTTCTTCTGCGGCT
CCGGGGCCTGCAGAACTAACCTCCAAGACCAGCTGATTTGTAAATACTTGACTCATGGGA
TTGCTAGACAGACTTTCAGGCCTGCTTGGCCTAAAGAAGAAGGAGGTTCATGTTTTGTGC
CTTGGGCTGGATAATAGTGGCAAAACAACAATCATTAATAAACTTAAACCTTCAAATGCT
CAGTCTCAAGATATAGTCCCAACGATAGGATTCAGCATAGAGAAATTCAAATCATCCAGT
TTGTCTTTTACTGTGTTTGACATGTCAGGCCAAGGAAGATACAGAAATCTCTGGGAACAC
TATTATAAAGAAGGACAAGCCATTATTTTTGTCATTGATAGTAGTGATAGATTAAGAATG
GTTGTGGCCAAAGAAGAACTTGATACTCTTCTGAATCATCCAGATATTAAGCACCGCCGA
ATACCAATCTTATTCTTTGCGAACAAAATGGATCTAAGAGATGCAGTGACATCTGTAAAA
GTGTCTCAATTGCTGTGTTTAGAGAACATCAAAGATAAACCATGGCATATTTGTGCTAGT
GATGCCATAAAAGGAGAAGGACTGCAAGAAGGTGTAGACTGGCTTCAAGATCAGATCCAG
GCTGTGAAGACATGAAAACATAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61828909|ref|XP_597222.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61828909|ref|XP_597222.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               210-358, gnl|bosTau2|chr1 (21913360-21913513)
               

               
               210-358, gnl|Hg17|chr3 (98969612-98969765)
               

               
               210-358, gnl|Mm7|chr16 (59568334-59568181)
               


               
               561-713, gnl|bosTau2|chr1 (21937136-21937289)
               

               
               561-713, gnl|Hg17|chr3 (98989500-98989653)
               

               
               561-713, gnl|Mm7|chr16 (59557243-59557090)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-358, gnl|bosTau2|chr1 (21913360-21913513)
               

               
               210-358, gnl|Hg17|chr3 (98969612-98969765)
               

               
               210-358, gnl|Mm7|chr16 (59568334-59568181)
               


               
               561-713, gnl|bosTau2|chr1 (21937136-21937289)
               

               
               561-713, gnl|Hg17|chr3 (98989500-98989653)
               

               
               561-713, gnl|Mm7|chr16 (59557243-59557090)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

	210-358, gnl\|bosTau2\|chr1 (21913360-21913513)
	210-358, gnl\|Hg17\|chr3 (98969612-98969765)
	210-358, gnl\|Mm7\|chr16 (59568334-59568181)

	561-713, gnl\|bosTau2\|chr1 (21937136-21937289)
	561-713, gnl\|Hg17\|chr3 (98989500-98989653)
	561-713, gnl\|Mm7\|chr16 (59557243-59557090)

	cty (0.20816)
	nlu (0.191681)
	lyg (0.133103)
	kid (0.129735)
	clu (0.119646)