Ss1.1-ruio27_o8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACCAACAGGAACAGGTCAAAGAAGACATGGAGACCAAGTGCTTCATCTGTGGCATAG GAAATGATTACTTCGACACTGTGCCACATGGCTTTGAAACCCACACTCTACAGGAACACA ACTTGGCCAATTATCTGTTTTTTCTGATGTATCTCATAAACAAGGATGAAACAGAGCACA CAGGACAGGAATCTTATGTTTGGAAGATGTATCAAGAAAGGTGCTGGGAATTTTTCCCAG CCGGGGATTGTTTCCGGAAACAATATGAAGACCAGTTAAATTAAACTCAGTCTCAGATCA CCTTGAACAACCAAAACACACATGCTCTCTCTCCCTCTCTCTGGCTCGCTCTCTCTCTGC CTCCCGACTCTCTCTCTCTTGCTCTCTCTCTGTCTCTGCTCTCTGGGAAACATCCTGCTG ATTTTGTGACTTGCCAGCGTTACAGCTTTCCGGAAGCAGTTGACGCTCTGTTTCTGAAGA CCTGACTGTTCTTTTCCCCCGTCTTGTGTATTTTGAGAATAATGACTGAAGAATCATCTA AATTCACACACAGACAAAATAGGAACTCTGGAGAGAAAAACCACATTCTGGAGACTCTCA ATCATCACACAGATTTCCTTCTGAGTCTCCCAAAATCTCCCTGCGCTATGGGACATTCAC AGAGAAGCGTGGCAGCCACACTCATCCGGCCTCTTTATTTCACCATCCAGAAAGGAACTC TGTAAAGGTCACAGAGCACTGTAGCACTTACCAGATTGCCGTGGACACCAGTAACGAAGG GAAATAGTGCCTTACTATATGTGGGTTGAGCTATGCAGAAGATATGTGCATGAAAAAACA TCTTTATTTTCTTTATGTCAACGTTTTTTTCTTAGATTGATTTTTGTGAGGGTTTTTTTT TTTTTCATGCTTTTCTTTGGTGGGAGAGGGTAAGAAAAGCAGTTTGCACACACCTTTTTA AAAAGACGGGTGGCCTGTCTCAGGACGAGAGGAGGTTCTTCTCATTCACATTTTCCCTCC CCATGTGCTCCTGCTTTTATTTTGGTAATGCTCTGATGCAACACTGCAACTTTATGAAAT CTTTGTATGAACACAAAAAGACTGCAAAAAATACACTTTCAAAAGAAATAATTCATTGCA TGTTTATTATGCAAGTTTAAACGAACCAAGAAAACCTTCCAAAGTAAGTTGATCCACGTG AGAGAACTTTCATGATAATTATATTCATAGTAATAAAGTGTCGTGGGCTTAATTGTATCT TTGGAGCCAGTGTCATCCACCAACAATGTGATACGTTATGAACTTGACAGTAGTTTTGGG TTTTTCTCTTTCTTTCGGCCACCTGTGATCAGCTGTTGATTAAGGACTTCTTGTCAGGCC ATTTTTTAATATCAAAGCTGAAGCAATATCCATTCAGGGATTTCATCAGTTGCATCAAAA AACACGGATGAGAATATCAATCACTCCATTTTGAGTCCTTTTAAATGTAATGCGAATCTT TACAAATAAAAAGACAGATTCAGAGTGGGAAGCAAGGTCATTTTGCAAACATTGGAGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACCAACAGGAACAGGTCAAAGAAGACATGGAGACCAAGTGCTTCATCTGTGGCATAG GAAATGATTACTTCGACACTGTGCCACATGGCTTTGAAACCCACACTCTACAGGAACACA ACTTGGCCAATTATCTGTTTTTTCTGATGTATCTCATAAACAAGGATGAAACAGAGCACA CAGGACAGGAATCTTATGTTTGGAAGATGTATCAAGAAAGGTGCTGGGAATTTTTCCCAG CCGGGGATTGTTTCCGGAAACAATATGAAGACCAGTTAAATTAAACTCAGTCTCAGATCA CCTTGAACAACCAAAACACACATGCTCTCTCTCCCTCTCTCTGGCTCGCTCTCTCTCTGC CTCCCGACTCTCTCTCTCTTGCTCTCTCTCTGTCTCTGCTCTCTGGGAAACATCCTGCTG ATTTTGTGACTTGCCAGCGTTACAGCTTTCCGGAAGCAGTTGACGCTCTGTTTCTGAAGA CCTGACTGTTCTTTTCCCCCGTCTTGTGTATTTTGAGAATAATGACTGAAGAATCATCTA AATTCACACACAGACAAAATAGGAACTCTGGAGAGAAAAACCACATTCTGGAGACTCTCA ATCATCACACAGATTTCCTTCTGAGTCTCCCAAAATCTCCCTGCGCTATGGGACATTCAC AGAGAAGCGTGGCAGCCACACTCATCCGGCCTCTTTATTTCACCATCCAGAAAGGAACTC TGTAAAGGTCACAGAGCACTGTAGCACTTACCAGATTGCCGTGGACACCAGTAACGAAGG GAAATAGTGCCTTACTATATGTGGGTTGAGCTATGCAGAAGATATGTGCATGAAAAAACA TCTTTATTTTCTTTATGTCAACGTTTTTTTCTTAGATTGATTTTTGTGAGGGTTTTTTTT TTTTTCATGCTTTTCTTTGGTGGGAGAGGGTAAGAAAAGCAGTTTGCACACACCTTTTTA AAAAGACGGGTGGCCTGTCTCAGGACGAGAGGAGGTTCTTCTCATTCACATTTTCCCTCC CCATGTGCTCCTGCTTTTATTTTGGTAATGCTCTGATGCAACACTGCAACTTTATGAAAT CTTTGTATGAACACAAAAAGACTGCAAAAAATACACTTTCAAAAGAAATAATTCATTGCA TGTTTATTATGCAAGTTTAAACGAACCAAGAAAACCTTCCAAAGTAAGTTGATCCACGTG AGAGAACTTTCATGATAATTATATTCATAGTAATAAAGTGTCGTGGGCTTAATTGTATCT TTGGAGCCAGTGTCATCCACCAACAATGTGATACGTTATGAACTTGACAGTAGTTTTGGG TTTTTCTCTTTCTTTCGGCCACCTGTGATCAGCTGTTGATTAAGGACTTCTTGTCAGGCC ATTTTTTAATATCAAAGCTGAAGCAATATCCATTCAGGGATTTCATCAGTTGCATCAAAA AACACGGATGAGAATATCAATCACTCCATTTTGAGTCCTTTTAAATGTAATGCGAATCTT TACAAATAAAAAGACAGATTCAGAGTGGGAAGCAAGGTCATTTTGCAAACATTGGAGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 34-138, gnl|bosTau2|chr28 (5762422-5762526) | |
| 34-138, gnl|canFam2|chr4 (5373562-5373413) | |
| 34-138, gnl|danRer3|chr20 (37109017-37109131) | |
| 34-138, gnl|dasNov1|scaffold_4612 (19881-19734) | |
| 34-138, gnl|echTel1|scaffold_58090 (1826-1675) | |
| 34-138, gnl|fr1|chrUn (81751295-81751436) | |
| 34-138, gnl|galGal2|chr3 (33583626-33583480) | |
| 34-138, gnl|hg17|chr1 (234319837-234319984) | |
| 34-138, gnl|Hg17|chr1 (234319869-234319973) | |
| 34-138, gnl|loxAfr1|scaffold_25149 (14233-14386) | |
| 34-138, gnl|mm7|chr13 (11485166-11485017) | |
| 34-138, gnl|Mm7|chr13 (11485128-11485024) | |
| 34-138, gnl|monDom2|scaffold_13 (47494879-47494728) | |
| 34-138, gnl|oryCun1|scaffold_202263 (48942-49093) | |
| 34-138, gnl|panTro1|chr1_random (51663530-51663383) | |
| 34-138, gnl|rheMac2|chr1 (219213391-219213244) | |
| 34-138, gnl|rn3|chr17 (69553306-69553455) | |
| 34-138, gnl|tetNig1|chr10 (4173659-4173799) | |
| 34-138, gnl|xenTro1|scaffold_572 (670831-670980) | |
| 185-1560, gnl|bosTau2|chr28 (5774523-5775879) | |
| 185-1560, gnl|Hg17|chr1 (234321889-234323262) | |
| 185-1560, gnl|Mm7|chr13 (11483043-11481597) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-138, gnl|bosTau2|chr28 (5762422-5762526) | |
| 34-138, gnl|canFam2|chr4 (5373562-5373413) | |
| 34-138, gnl|danRer3|chr20 (37109017-37109131) | |
| 34-138, gnl|dasNov1|scaffold_4612 (19881-19734) | |
| 34-138, gnl|echTel1|scaffold_58090 (1826-1675) | |
| 34-138, gnl|fr1|chrUn (81751295-81751436) | |
| 34-138, gnl|galGal2|chr3 (33583626-33583480) | |
| 34-138, gnl|hg17|chr1 (234319837-234319984) | |
| 34-138, gnl|Hg17|chr1 (234319869-234319973) | |
| 34-138, gnl|loxAfr1|scaffold_25149 (14233-14386) | |
| 34-138, gnl|mm7|chr13 (11485166-11485017) | |
| 34-138, gnl|Mm7|chr13 (11485128-11485024) | |
| 34-138, gnl|monDom2|scaffold_13 (47494879-47494728) | |
| 34-138, gnl|oryCun1|scaffold_202263 (48942-49093) | |
| 34-138, gnl|panTro1|chr1_random (51663530-51663383) | |
| 34-138, gnl|rheMac2|chr1 (219213391-219213244) | |
| 34-138, gnl|rn3|chr17 (69553306-69553455) | |
| 34-138, gnl|tetNig1|chr10 (4173659-4173799) | |
| 34-138, gnl|xenTro1|scaffold_572 (670831-670980) | |
| 185-1560, gnl|bosTau2|chr28 (5774523-5775879) | |
| 185-1560, gnl|Hg17|chr1 (234321889-234323262) | |
| 185-1560, gnl|Mm7|chr13 (11483043-11481597) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| hea (1.43149) | |
| hlv (0.696282) | |
| liv (0.292569) | |
| kid (0.259471) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (1.43149) | |
| hlv (0.696282) | |
| liv (0.292569) | |
| kid (0.259471) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) |