Non-Coding RNA Search

Ss1.1-ruio28_e4.5

Sequence:


               
               TTGTCTTCCACGCTGCTTAAGAATGGACTTCTCAGAGACAGTCAAATGGATTCATATGAA
GTGCTTTACTCTCAACCATTGAATTATTTATAGTGTATTTATTAGAAGGGGTACCTTGAG
ACTGTCGTACATGGCTTCAGCAAAACATCTTGTTTATATTTTATATTTTAAAAAAGGCAT
TTGAAAGAATTTTGACTCAGGCTCATTAACTTAACCTTCAAAAACTGCAGTACCAAATAA
TTGCACTAAGCTGATGAAAAAAATGAATTGTATGTTTTAGGAATCAAAAATTAGGTGGAA
TTCAACTGTGTACCTTTTTAAAGCTGAAATAGTAAAATATTTTATTATGAGTTATTGTAA
TAAATGATTGGTTAATTGTATAGGAAGAGGATAGTATTTTTTTTTTAAATTATCAGTGAA
AAGTAATTCAGATAACATTTGAGAAGTGGGAGAAAGGGAACCATATTGACAGATTCAGTT
CTATGAACACTGATTCATGCGCAGCTATGAAATGATTGTAAATTTGACTACTGTAAATTT
TCCATAATTATGTGTGTATATTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTCTTCCACGCTGCTTAAGAATGGACTTCTCAGAGACAGTCAAATGGATTCATATGAA
GTGCTTTACTCTCAACCATTGAATTATTTATAGTGTATTTATTAGAAGGGGTACCTTGAG
ACTGTCGTACATGGCTTCAGCAAAACATCTTGTTTATATTTTATATTTTAAAAAAGGCAT
TTGAAAGAATTTTGACTCAGGCTCATTAACTTAACCTTCAAAAACTGCAGTACCAAATAA
TTGCACTAAGCTGATGAAAAAAATGAATTGTATGTTTTAGGAATCAAAAATTAGGTGGAA
TTCAACTGTGTACCTTTTTAAAGCTGAAATAGTAAAATATTTTATTATGAGTTATTGTAA
TAAATGATTGGTTAATTGTATAGGAAGAGGATAGTATTTTTTTTTTAAATTATCAGTGAA
AAGTAATTCAGATAACATTTGAGAAGTGGGAGAAAGGGAACCATATTGACAGATTCAGTT
CTATGAACACTGATTCATGCGCAGCTATGAAATGATTGTAAATTTGACTACTGTAAATTT
TCCATAATTATGTGTGTATATTAG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-564, gnl|bosTau2|chr3 (38835719-38835164)
               

               
               1-564, gnl|canFam2|chr6 (52548468-52547256)
               

               
               1-564, gnl|dasNov1|scaffold_30651 (10257-11503)
               

               
               1-564, gnl|echTel1|scaffold_317339 (45904-44700)
               

               
               1-564, gnl|hg17|chr1 (100696738-100697995)
               

               
               1-564, gnl|Hg17|chr1 (100697046-100697615)
               

               
               1-564, gnl|loxAfr1|scaffold_33683 (6850-5605)
               

               
               1-564, gnl|mm7|chr3 (116047860-116046605)
               

               
               1-564, gnl|Mm7|chr3 (116047543-116046979)
               

               
               1-564, gnl|monDom2|scaffold_0 (18387795-18386495)
               

               
               1-564, gnl|oryCun1|scaffold_213150 (14169-12913)
               

               
               1-564, gnl|panTro1|chr1 (99743092-99744350)
               

               
               1-564, gnl|rheMac2|chr1 (103579809-103581064)
               

               
               1-564, gnl|rn3|chr2 (212459425-212458167)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr3 (38835719-38835164)
               

               
               1-564, gnl|canFam2|chr6 (52548468-52547256)
               

               
               1-564, gnl|dasNov1|scaffold_30651 (10257-11503)
               

               
               1-564, gnl|echTel1|scaffold_317339 (45904-44700)
               

               
               1-564, gnl|hg17|chr1 (100696738-100697995)
               

               
               1-564, gnl|Hg17|chr1 (100697046-100697615)
               

               
               1-564, gnl|loxAfr1|scaffold_33683 (6850-5605)
               

               
               1-564, gnl|mm7|chr3 (116047860-116046605)
               

               
               1-564, gnl|Mm7|chr3 (116047543-116046979)
               

               
               1-564, gnl|monDom2|scaffold_0 (18387795-18386495)
               

               
               1-564, gnl|oryCun1|scaffold_213150 (14169-12913)
               

               
               1-564, gnl|panTro1|chr1 (99743092-99744350)
               

               
               1-564, gnl|rheMac2|chr1 (103579809-103581064)
               

               
               1-564, gnl|rn3|chr2 (212459425-212458167)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               sin (0.524843)
               

               
               tra (0.492368)
               

               
               kid (0.259471)
               

               
               lin (0.145603)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.524843)
               

               
               tra (0.492368)
               

               
               kid (0.259471)
               

               
               lin (0.145603)

	1-564, gnl\|bosTau2\|chr3 (38835719-38835164)
	1-564, gnl\|canFam2\|chr6 (52548468-52547256)
	1-564, gnl\|dasNov1\|scaffold_30651 (10257-11503)
	1-564, gnl\|echTel1\|scaffold_317339 (45904-44700)
	1-564, gnl\|hg17\|chr1 (100696738-100697995)
	1-564, gnl\|Hg17\|chr1 (100697046-100697615)
	1-564, gnl\|loxAfr1\|scaffold_33683 (6850-5605)
	1-564, gnl\|mm7\|chr3 (116047860-116046605)
	1-564, gnl\|Mm7\|chr3 (116047543-116046979)
	1-564, gnl\|monDom2\|scaffold_0 (18387795-18386495)
	1-564, gnl\|oryCun1\|scaffold_213150 (14169-12913)
	1-564, gnl\|panTro1\|chr1 (99743092-99744350)
	1-564, gnl\|rheMac2\|chr1 (103579809-103581064)
	1-564, gnl\|rn3\|chr2 (212459425-212458167)