Ss1.1-ruio28_e8.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAGCTAAGCTAGCATTTGCTTGGGTTACGCTAACGGTTCGCAGCCATGAGCTTTGGGG TCAAGGGCAAAAGCTTCCTGGCAGCAGGCTGTCTACAGCACCAAGTGGCCGTCGTCACTG GCGGAGGCACAGGCATAGGAAAGGCCATCACCAGTGAGCTCCTGCATCTGGGGTGTAATG TGGTCATTGCATCCCGGAAGTTTGATAGATTAAAATCCACTGCGGATGAACTGATGGCCA GTCTGCCTTCTGCCAGCAAGGCTCAAGTCACTCCGATAAAATGCAATATCCGTAATGAAG AGGAAGTGAATAGTTTGGTTAAATCCACCTTAGATGTTTATGGTAAGATCAATTTCTTGG TCAACAATGGAGGAGGCCAGTTCATATCTTCTGCTGAAGACATCAGTTCAAAGGGATGGC AGGCTGTGATTGAAACCAACCTGACAGGCACCTTCTACATGTGCAAAGCAGTTTATAAGG CCTGGATGAAAAATCATGGAGGATCTATTGTCAATATCATTCTTACTACTAAAAATGGAA ATCCGCATATGGCGCATAGCGGAGCTGCCAGAGAAGGTGTTTGCAACCTCACCAAATCCT TAGCTCTGGAATGGGCCAACAGTGGAATAAGGATCAATTGTGTTGCCCCTGGAAGTGTTT ATTCTCAGACTGCTTCTGACAACTATGGTCCTGCAGGACAAGTCTTATTTGAAGGGTTTT ATGAGAAAATCCCGGCTAAGAGACTTGGAGTTCCTGAGGAGATCTCCCCCTTGGTGTGCT TCCTGCTATCTCCGGCAGCTTCGTTTATCACTGGACAGGTGGTGGATGTGGATGGAGGCC AATCTCTGAATCTGCAAGGCTTTGAGATAGCAGATCATGACAACTGGCCTGAAGGAGCGG GGGACCTTTCAGTTGTCAAAAGGATGAAGGAGTCTTACAAGAAGAGAGCCAAGCTCTAAG CTAAGGAAACATGGAAGTGTCCTTTGTCCCCAAGTGCCTTAACATCTTGAGCATGTACTT CTGTACTTTATGGGAACTTAATTTGCTTTTTTAATATTATCAATTACAACTATGCAAAAA CTCTTGCTAAAATAAATGCATTTTCTTTTGGCCACGCCTGTGGCATGTGGACGTTCCCCA GGCCAGGGAACAAAACTGTGCCACAGCAGTGACCCGAGCCACTATAGTGACAATGCTGGG ATCCTTAACCCACCTTGCCACAAGAGGATCAATAAATGCATTTTTAAGTCCCAACCAATG CCCTTCAACTTGTGATCAGAAACATTTTTGATGAATGGGAGTTCCTGACGTAGTTCAGTG GTTGATGAACCCGACTAATATCCATGAGGATGTGGGTTCAATCTCTGGTTCTGCTCAGTG GGTTAAGAATCCAGCATTGCCATGAACTGTGGTGTAAGTTGCAGATGTGGCTCGTATCTG GCGTTGCTGTGGCTGTAGGTCAGCAGCTACAGCTCTTGTTCGATCCCTAGCCTGGGAACC TCCACATGATGTGGGTGCGGCCCCACCAAAAAAAAATTTTAGCAATAGAAATCAACATGC GTTGTGCTTTTTTTAATTCTAAGAAAGGTATTTGAAAAGTGAAATAATTTCAAATTAATG ACAGAGGTACCATCATCTCCCAAAAGATTTGAATATTTAATTATAAAGGTAGGCAATAAA TCTATTGTGGCATCATTTGATTTTTACAGCAGAAATATACCATGACTCACTGGTGGCACT TTTGGATTAATAAAACTGTATGTGATAATTGAGGTATGATTTGTTCACGAAGTCAAATCT GTGTAAGTCCTCTTAACTGAAAAGAAAAATAAAGTCCTAAGGAGTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAGCTAAGCTAGCATTTGCTTGGGTTACGCTAACGGTTCGCAGCCATGAGCTTTGGGG TCAAGGGCAAAAGCTTCCTGGCAGCAGGCTGTCTACAGCACCAAGTGGCCGTCGTCACTG GCGGAGGCACAGGCATAGGAAAGGCCATCACCAGTGAGCTCCTGCATCTGGGGTGTAATG TGGTCATTGCATCCCGGAAGTTTGATAGATTAAAATCCACTGCGGATGAACTGATGGCCA GTCTGCCTTCTGCCAGCAAGGCTCAAGTCACTCCGATAAAATGCAATATCCGTAATGAAG AGGAAGTGAATAGTTTGGTTAAATCCACCTTAGATGTTTATGGTAAGATCAATTTCTTGG TCAACAATGGAGGAGGCCAGTTCATATCTTCTGCTGAAGACATCAGTTCAAAGGGATGGC AGGCTGTGATTGAAACCAACCTGACAGGCACCTTCTACATGTGCAAAGCAGTTTATAAGG CCTGGATGAAAAATCATGGAGGATCTATTGTCAATATCATTCTTACTACTAAAAATGGAA ATCCGCATATGGCGCATAGCGGAGCTGCCAGAGAAGGTGTTTGCAACCTCACCAAATCCT TAGCTCTGGAATGGGCCAACAGTGGAATAAGGATCAATTGTGTTGCCCCTGGAAGTGTTT ATTCTCAGACTGCTTCTGACAACTATGGTCCTGCAGGACAAGTCTTATTTGAAGGGTTTT ATGAGAAAATCCCGGCTAAGAGACTTGGAGTTCCTGAGGAGATCTCCCCCTTGGTGTGCT TCCTGCTATCTCCGGCAGCTTCGTTTATCACTGGACAGGTGGTGGATGTGGATGGAGGCC AATCTCTGAATCTGCAAGGCTTTGAGATAGCAGATCATGACAACTGGCCTGAAGGAGCGG GGGACCTTTCAGTTGTCAAAAGGATGAAGGAGTCTTACAAGAAGAGAGCCAAGCTCTAAG CTAAGGAAACATGGAAGTGTCCTTTGTCCCCAAGTGCCTTAACATCTTGAGCATGTACTT CTGTACTTTATGGGAACTTAATTTGCTTTTTTAATATTATCAATTACAACTATGCAAAAA CTCTTGCTAAAATAAATGCATTTTCTTTTGGCCACGCCTGTGGCATGTGGACGTTCCCCA GGCCAGGGAACAAAACTGTGCCACAGCAGTGACCCGAGCCACTATAGTGACAATGCTGGG ATCCTTAACCCACCTTGCCACAAGAGGATCAATAAATGCATTTTTAAGTCCCAACCAATG CCCTTCAACTTGTGATCAGAAACATTTTTGATGAATGGGAGTTCCTGACGTAGTTCAGTG GTTGATGAACCCGACTAATATCCATGAGGATGTGGGTTCAATCTCTGGTTCTGCTCAGTG GGTTAAGAATCCAGCATTGCCATGAACTGTGGTGTAAGTTGCAGATGTGGCTCGTATCTG GCGTTGCTGTGGCTGTAGGTCAGCAGCTACAGCTCTTGTTCGATCCCTAGCCTGGGAACC TCCACATGATGTGGGTGCGGCCCCACCAAAAAAAAATTTTAGCAATAGAAATCAACATGC GTTGTGCTTTTTTTAATTCTAAGAAAGGTATTTGAAAAGTGAAATAATTTCAAATTAATG ACAGAGGTACCATCATCTCCCAAAAGATTTGAATATTTAATTATAAAGGTAGGCAATAAA TCTATTGTGGCATCATTTGATTTTTACAGCAGAAATATACCATGACTCACTGGTGGCACT TTTGGATTAATAAAACTGTATGTGATAATTGAGGTATGATTTGTTCACGAAGTCAAATCT GTGTAAGTCCTCTTAACTGAAAAGAAAAATAAAGTCCTAAGGAGTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 5-172, gnl|bosTau2|chr2 (58696317-58696150) | |
| 5-172, gnl|canFam2|chr37 (26066608-26066863) | |
| 5-172, gnl|dasNov1|scaffold_71835 (4505-4232) | |
| 5-172, gnl|hg17|chr2 (216771734-216771971) | |
| 5-172, gnl|Hg17|chr2 (216772016-216771846) | |
| 5-172, gnl|mm7|chr1 (72525806-72526059) | |
| 5-172, gnl|Mm7|chr1 (72526074-72525934) | |
| 5-172, gnl|oryCun1|scaffold_212962 (148313-148557) | |
| 5-172, gnl|rheMac2|chr12 (79899584-79899820) | |
| 5-172, gnl|rn3|chr9 (71590368-71590607) | |
| 306-471, gnl|bosTau2|chr2 (58685190-58685025) | |
| 306-471, gnl|canFam2|chr37 (26062446-26062644) | |
| 306-471, gnl|danRer3|chr11 (35569987-35569798) | |
| 306-471, gnl|dasNov1|scaffold_30641 (14067-13861) | |
| 306-471, gnl|echTel1|scaffold_174672 (3292-3463) | |
| 306-471, gnl|fr1|chrUn (68123965-68124135) | |
| 306-471, gnl|hg17|chr2 (216755521-216755727) | |
| 306-471, gnl|Hg17|chr2 (216755706-216755541) | |
| 306-471, gnl|loxAfr1|scaffold_46178 (6028-6235) | |
| 306-471, gnl|mm7|chr1 (72517984-72518183) | |
| 306-471, gnl|Mm7|chr1 (72518173-72518008) | |
| 306-471, gnl|monDom2|scaffold_39 (5264103-5263905) | |
| 306-471, gnl|oryCun1|scaffold_212962 (134454-134652) | |
| 306-471, gnl|panTro1|chr13 (106931171-106931377) | |
| 306-471, gnl|rheMac2|chr12 (79883287-79883493) | |
| 306-471, gnl|rn3|chr9 (71581052-71581246) | |
| 306-471, gnl|tetNig1|chr15 (2387594-2387422) | |
| 306-471, gnl|xenTro1|scaffold_633 (114219-114030) | |
| 554-682, gnl|bosTau2|chr2 (58670899-58670769) | |
| 554-682, gnl|Hg17|chr2 (216741774-216741643) | |
| 554-682, gnl|Mm7|chr1 (72512215-72512085) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-172, gnl|bosTau2|chr2 (58696317-58696150) | |
| 5-172, gnl|canFam2|chr37 (26066608-26066863) | |
| 5-172, gnl|dasNov1|scaffold_71835 (4505-4232) | |
| 5-172, gnl|hg17|chr2 (216771734-216771971) | |
| 5-172, gnl|Hg17|chr2 (216772016-216771846) | |
| 5-172, gnl|mm7|chr1 (72525806-72526059) | |
| 5-172, gnl|Mm7|chr1 (72526074-72525934) | |
| 5-172, gnl|oryCun1|scaffold_212962 (148313-148557) | |
| 5-172, gnl|rheMac2|chr12 (79899584-79899820) | |
| 5-172, gnl|rn3|chr9 (71590368-71590607) | |
| 306-471, gnl|bosTau2|chr2 (58685190-58685025) | |
| 306-471, gnl|canFam2|chr37 (26062446-26062644) | |
| 306-471, gnl|danRer3|chr11 (35569987-35569798) | |
| 306-471, gnl|dasNov1|scaffold_30641 (14067-13861) | |
| 306-471, gnl|echTel1|scaffold_174672 (3292-3463) | |
| 306-471, gnl|fr1|chrUn (68123965-68124135) | |
| 306-471, gnl|hg17|chr2 (216755521-216755727) | |
| 306-471, gnl|Hg17|chr2 (216755706-216755541) | |
| 306-471, gnl|loxAfr1|scaffold_46178 (6028-6235) | |
| 306-471, gnl|mm7|chr1 (72517984-72518183) | |
| 306-471, gnl|Mm7|chr1 (72518173-72518008) | |
| 306-471, gnl|monDom2|scaffold_39 (5264103-5263905) | |
| 306-471, gnl|oryCun1|scaffold_212962 (134454-134652) | |
| 306-471, gnl|panTro1|chr13 (106931171-106931377) | |
| 306-471, gnl|rheMac2|chr12 (79883287-79883493) | |
| 306-471, gnl|rn3|chr9 (71581052-71581246) | |
| 306-471, gnl|tetNig1|chr15 (2387594-2387422) | |
| 306-471, gnl|xenTro1|scaffold_633 (114219-114030) | |
| 554-682, gnl|bosTau2|chr2 (58670899-58670769) | |
| 554-682, gnl|Hg17|chr2 (216741774-216741643) | |
| 554-682, gnl|Mm7|chr1 (72512215-72512085) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| kid (0.908147) | |
| cki (0.826173) | |
| pro (0.512033) | |
| ste (0.405625) | |
| sto (0.359648) | |
| gul (0.355177) | |
| eye (0.341006) | |
| cut (0.339847) | |
| cje (0.330469) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spc (0.226732) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.908147) | |
| cki (0.826173) | |
| pro (0.512033) | |
| ste (0.405625) | |
| sto (0.359648) | |
| gul (0.355177) | |
| eye (0.341006) | |
| cut (0.339847) | |
| cje (0.330469) | |
| ski (0.29347) | |
| liv (0.292569) | |
| spc (0.226732) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lin (0.145603) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |