Non-Coding RNA Search

Ss1.1-ruio28_f17.5

Sequence:


               
               GACACTATGGGGAATCTATAACAAATATAGGCAAAGCAAGTATATTAGGGGCTGCAAGCA
TCGGAAAGGGACTTGGAGGAATGTTGTTCTCAAGATTTGGACGTTCATCTACATCACAGC
CATCGGAGACAAGAGACGCTGTAGAAGACGAGAAGAAACCGGTCACCTCACCTCCTACGA
CCACCGTGGCAGTGCAGACCCTTCCACATAGTAGCTCTGGCTTTCTTGACTCTGCATATT
TCAGACTTCAGGAATCGTTCTTTAATCTCCCACAACTTCTTTTTCCGGAAAATGTAATGC
AGAATAAAGATAATACCCTCGGGGAATTGGATCACAGAATTGATTTTGAACTCAGAGAAG
GCCTTGTGGAGAGTCGCTATTGGTCAGCTGTCACGTCGCATACTGCCTATTGGTCGTCCT
TGGATGTTGCCCTCTTTCTTTTAACCTTCATGTATAAACATGACAAGCATGACAATAATG
CAAAACCCAATTTAGATCCAATCTGAACTCCTAAAGGACATTAGTGGCCCCAAACTGATT
TTTTTCTGTTAAAATATGTATGTCAAGATATGAAAGTTTCAAGTTTAAATATGTCTCAGT
TTTGTTTAGGGCAAGAAGATTTTAATTTAAAAGCACTTTATATTATTTAAAAACAAAACG
TATGTTCAGTCCGAAAAAAGTTATTTAGTTTTCATCATTTTAATTATGAGTCTGACAGAA
CCCCCTACAGAATCAAACAAGACCTGGAAGTGAGGAAGGTTTGGGTAGACTGCAGGGTTC
TAATCACAACCTAACTTCTTCCAAATATAAAGGCATAGTAATGGGTTGAATCTAATTTAC
TAACCAAAATGTGTTATAAATCTCAAATGCTTAAGGTTCAGGGTATTCTGTATAAAGATC
ACAACGTGGTATCATTGTTTTAGATTTCTATGAAAGCTTCCATTTCCACAGTTCCTTTGA
AACATGAATATAACAGATTTAAAATGTTTTGAGTTTAACTTGTTTCAAAGAACTAATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTATGGGGAATCTATAACAAATATAGGCAAAGCAAGTATATTAGGGGCTGCAAGCA
TCGGAAAGGGACTTGGAGGAATGTTGTTCTCAAGATTTGGACGTTCATCTACATCACAGC
CATCGGAGACAAGAGACGCTGTAGAAGACGAGAAGAAACCGGTCACCTCACCTCCTACGA
CCACCGTGGCAGTGCAGACCCTTCCACATAGTAGCTCTGGCTTTCTTGACTCTGCATATT
TCAGACTTCAGGAATCGTTCTTTAATCTCCCACAACTTCTTTTTCCGGAAAATGTAATGC
AGAATAAAGATAATACCCTCGGGGAATTGGATCACAGAATTGATTTTGAACTCAGAGAAG
GCCTTGTGGAGAGTCGCTATTGGTCAGCTGTCACGTCGCATACTGCCTATTGGTCGTCCT
TGGATGTTGCCCTCTTTCTTTTAACCTTCATGTATAAACATGACAAGCATGACAATAATG
CAAAACCCAATTTAGATCCAATCTGAACTCCTAAAGGACATTAGTGGCCCCAAACTGATT
TTTTTCTGTTAAAATATGTATGTCAAGATATGAAAGTTTCAAGTTTAAATATGTCTCAGT
TTTGTTTAGGGCAAGAAGATTTTAATTTAAAAGCACTTTATATTATTTAAAAACAAAACG
TATGTTCAGTCCGAAAAAAGTTATTTAGTTTTCATCATTTTAATTATGAGTCTGACAGAA
CCCCCTACAGAATCAAACAAGACCTGGAAGTGAGGAAGGTTTGGGTAGACTGCAGGGTTC
TAATCACAACCTAACTTCTTCCAAATATAAAGGCATAGTAATGGGTTGAATCTAATTTAC
TAACCAAAATGTGTTATAAATCTCAAATGCTTAAGGTTCAGGGTATTCTGTATAAAGATC
ACAACGTGGTATCATTGTTTTAGATTTCTATGAAAGCTTCCATTTCCACAGTTCCTTTGA
AACATGAATATAACAGATTTAAAATGTTTTGAGTTTAACTTGTTTCAAAGAACTAATGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17390016|gb|AAH18014.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17390016|gb|AAH18014.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               47-240, gnl|bosTau2|chr10 (46087624-46087820)
               

               
               47-240, gnl|Hg17|chr14 (52591099-52590903)
               

               
               47-240, gnl|Mm7|chr14 (40920216-40920020)
               


               
               323-1019, gnl|bosTau2|chr10 (46095421-46096119)
               

               
               323-1019, gnl|Hg17|chr14 (52583416-52582724)
               

               
               323-1019, gnl|Mm7|chr14 (40914121-40913461)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-240, gnl|bosTau2|chr10 (46087624-46087820)
               

               
               47-240, gnl|Hg17|chr14 (52591099-52590903)
               

               
               47-240, gnl|Mm7|chr14 (40920216-40920020)
               


               
               323-1019, gnl|bosTau2|chr10 (46095421-46096119)
               

               
               323-1019, gnl|Hg17|chr14 (52583416-52582724)
               

               
               323-1019, gnl|Mm7|chr14 (40914121-40913461)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.226732)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	47-240, gnl\|bosTau2\|chr10 (46087624-46087820)
	47-240, gnl\|Hg17\|chr14 (52591099-52590903)
	47-240, gnl\|Mm7\|chr14 (40920216-40920020)

	323-1019, gnl\|bosTau2\|chr10 (46095421-46096119)
	323-1019, gnl\|Hg17\|chr14 (52583416-52582724)
	323-1019, gnl\|Mm7\|chr14 (40914121-40913461)

	spc (0.226732)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	kid (0.129735)
	ret (0.128733)