Ss1.1-ruio28_h13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTTTGATGTCTGACGAAACAGCTCCCGCTGGAGACAATTTAGAGTGACTGGTAAAAGA AAATAAGCTCACAGCAACAAAAAGAATGCGATTCTTTCTGGACCTCCTCCTGCTTCTGCC CTTACTGCTCATCTTCACCTTAGAGTCTCTCCTGAAGCTTTTTATTCCTAAGAAGAGAAA ATCAGTCACCGGAGAAATCGTCCTGATTACTGGAGCTGGGCATGGACTTGGGAGGCTGAC TGCCTTTGAATTTGCCAAACTTAAATGCAAACTGGTCCTGTGGGATATAAATAAGCATGG ACTTGAGGAAACAGCTGATGAATGCAAGCGACTGGGCTCAAAGGCCCATGCCTTCGTGGT AGACTGCAGTGACCGCGAAGATATCTACAGCTCTGCGAAGAAGGTGAAGGCAGAAGTTGG AGACGTTAGTATTTTAGTAAATAATGCTGGTGTAGTCTACACATCAGATTTGTTTGCTAC ACAAGACCCTCAGATTGAAAAGACTTTTGAAGTTAATATACTTGCACATTTCTGGACTAC AAAGGCATTTCTTCCAGCGATGATGAAGAATAATCATGGCCATATTGTCACTGTGGCTTC AGCAGCTGGGCATGCTGGGATCCCCTTCTTACTGGCTTATTGTTCAAGCAAGTTTGCTGC TGTTGGATTTCATAAAGCTTTGACTGAAGAACTGGCTGCCTTAAAAAGAACTGGAGTCAA AACAACATGTCTCTGCCCTAATTTCATAAACACTGGCTTCATCAAAAACCCAAGTACCAG TTTGGGACCCCTCCTGGAACCTGAGGAAGTGGTGAATAGGCTAATAAACGGGATCCTGAC TGAGCAGAAAATGATCTTTATTCCATCTTCTATAAACTTTTTAACCGTGTTAGAAAGGAT CCTTCCTGAGCGTTTCTTGGCAGTTTTAAAACGAAAGATCAATGTTAGGTTTGATGCAGT TATTGGTTATAAAGTTAATGAACAATGAGTGCTTGGTTTTTTAAAAATTGGTTTACTAAG CTTAAGTTGATTTCATCTAATATTAATCAGAATTTTGATGTTTGGACTTCTGCTTTTCCT AATTATATATTTTTTTTTCTTCAAAACTATCTTTTGAGGCTCTGGCAGGTCCTAATTTCA GAGAATATATAGAAATATCTTGGGAACTGATCTTATGGAAAAACACAGAGAAAAGAAAAA CAGTTTTACAGTAAATAAGCTCCAAAATTTTGTGGCTCATCTGAAGGCTTTGCAAAGTTT GTACTACAAATATTTAAGATATATTTTTATTTTTAACTACGCTTAAATTTTGTATAATTC ACATGTTTCCTTTTCTAGTCTGTATAAAAACAGAAACTTCAAGCTAGCTAAATATAATGA AGGACTGTCTAGTGGCATTTCATGTCGAGTTCCTGTGATGCTCAAACATTTCATCCTACT CACTCTACCCTGTTTCCTGAGAAATCACCCACATTCCAGTGCCAGACATTTCAGCGCAAG GAAACCAGGGACGAACATATGTTGCACGTATAAAAGCACCACTGGGACTTGAGACAGAGA ATTGGGAGAATGTACCCATAAGTGGCAACGATAATAAATGGATCAAACTTAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTTTGATGTCTGACGAAACAGCTCCCGCTGGAGACAATTTAGAGTGACTGGTAAAAGA AAATAAGCTCACAGCAACAAAAAGAATGCGATTCTTTCTGGACCTCCTCCTGCTTCTGCC CTTACTGCTCATCTTCACCTTAGAGTCTCTCCTGAAGCTTTTTATTCCTAAGAAGAGAAA ATCAGTCACCGGAGAAATCGTCCTGATTACTGGAGCTGGGCATGGACTTGGGAGGCTGAC TGCCTTTGAATTTGCCAAACTTAAATGCAAACTGGTCCTGTGGGATATAAATAAGCATGG ACTTGAGGAAACAGCTGATGAATGCAAGCGACTGGGCTCAAAGGCCCATGCCTTCGTGGT AGACTGCAGTGACCGCGAAGATATCTACAGCTCTGCGAAGAAGGTGAAGGCAGAAGTTGG AGACGTTAGTATTTTAGTAAATAATGCTGGTGTAGTCTACACATCAGATTTGTTTGCTAC ACAAGACCCTCAGATTGAAAAGACTTTTGAAGTTAATATACTTGCACATTTCTGGACTAC AAAGGCATTTCTTCCAGCGATGATGAAGAATAATCATGGCCATATTGTCACTGTGGCTTC AGCAGCTGGGCATGCTGGGATCCCCTTCTTACTGGCTTATTGTTCAAGCAAGTTTGCTGC TGTTGGATTTCATAAAGCTTTGACTGAAGAACTGGCTGCCTTAAAAAGAACTGGAGTCAA AACAACATGTCTCTGCCCTAATTTCATAAACACTGGCTTCATCAAAAACCCAAGTACCAG TTTGGGACCCCTCCTGGAACCTGAGGAAGTGGTGAATAGGCTAATAAACGGGATCCTGAC TGAGCAGAAAATGATCTTTATTCCATCTTCTATAAACTTTTTAACCGTGTTAGAAAGGAT CCTTCCTGAGCGTTTCTTGGCAGTTTTAAAACGAAAGATCAATGTTAGGTTTGATGCAGT TATTGGTTATAAAGTTAATGAACAATGAGTGCTTGGTTTTTTAAAAATTGGTTTACTAAG CTTAAGTTGATTTCATCTAATATTAATCAGAATTTTGATGTTTGGACTTCTGCTTTTCCT AATTATATATTTTTTTTTCTTCAAAACTATCTTTTGAGGCTCTGGCAGGTCCTAATTTCA GAGAATATATAGAAATATCTTGGGAACTGATCTTATGGAAAAACACAGAGAAAAGAAAAA CAGTTTTACAGTAAATAAGCTCCAAAATTTTGTGGCTCATCTGAAGGCTTTGCAAAGTTT GTACTACAAATATTTAAGATATATTTTTATTTTTAACTACGCTTAAATTTTGTATAATTC ACATGTTTCCTTTTCTAGTCTGTATAAAAACAGAAACTTCAAGCTAGCTAAATATAATGA AGGACTGTCTAGTGGCATTTCATGTCGAGTTCCTGTGATGCTCAAACATTTCATCCTACT CACTCTACCCTGTTTCCTGAGAAATCACCCACATTCCAGTGCCAGACATTTCAGCGCAAG GAAACCAGGGACGAACATATGTTGCACGTATAAAAGCACCACTGGGACTTGAGACAGAGA ATTGGGAGAATGTACCCATAAGTGGCAACGATAATAAATGGATCAAACTTAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 15-295, gnl|bosTau2|chr5 (67949377-67949091) | |
| 15-295, gnl|Hg17|chr4 (88669479-88669192) | |
| 15-295, gnl|Mm7|chr5 (103211101-103210833) | |
| 400-535, gnl|bosTau2|chr5 (67934059-67933924) | |
| 400-535, gnl|Hg17|chr4 (88653165-88653030) | |
| 400-535, gnl|Mm7|chr5 (103199233-103199098) | |
| 642-780, gnl|bosTau2|chr5 (67925318-67925180) | |
| 642-780, gnl|canFam2|chr32 (13795272-13795446) | |
| 642-780, gnl|danRer3|chr19 (33603861-33603692) | |
| 642-780, gnl|dasNov1|scaffold_143163 (710-880) | |
| 642-780, gnl|echTel1|scaffold_179666 (10020-10190) | |
| 642-780, gnl|fr1|chrUn (284963963-284963795) | |
| 642-780, gnl|hg17|chr4 (88635605-88635773) | |
| 642-780, gnl|Hg17|chr4 (88635748-88635610) | |
| 642-780, gnl|loxAfr1|scaffold_45547 (11973-11800) | |
| 642-780, gnl|mm7|chr5 (103192470-103192638) | |
| 642-780, gnl|Mm7|chr5 (103192613-103192475) | |
| 642-780, gnl|monDom2|scaffold_37 (15688988-15688816) | |
| 642-780, gnl|oryCun1|scaffold_174974 (49950-50120) | |
| 642-780, gnl|panTro1|chr3 (104620559-104620727) | |
| 642-780, gnl|rheMac2|chr5 (80319021-80319193) | |
| 642-780, gnl|rn3|chr14 (6879429-6879262) | |
| 642-780, gnl|xenTro1|scaffold_380 (28004-28172) | |
| 896-1609, gnl|bosTau2|chr5 (67902442-67901718) | |
| 896-1609, gnl|Hg17|chr4 (88615699-88614945) | |
| 896-1609, gnl|Mm7|chr5 (103179899-103179148) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-295, gnl|bosTau2|chr5 (67949377-67949091) | |
| 15-295, gnl|Hg17|chr4 (88669479-88669192) | |
| 15-295, gnl|Mm7|chr5 (103211101-103210833) | |
| 400-535, gnl|bosTau2|chr5 (67934059-67933924) | |
| 400-535, gnl|Hg17|chr4 (88653165-88653030) | |
| 400-535, gnl|Mm7|chr5 (103199233-103199098) | |
| 642-780, gnl|bosTau2|chr5 (67925318-67925180) | |
| 642-780, gnl|canFam2|chr32 (13795272-13795446) | |
| 642-780, gnl|danRer3|chr19 (33603861-33603692) | |
| 642-780, gnl|dasNov1|scaffold_143163 (710-880) | |
| 642-780, gnl|echTel1|scaffold_179666 (10020-10190) | |
| 642-780, gnl|fr1|chrUn (284963963-284963795) | |
| 642-780, gnl|hg17|chr4 (88635605-88635773) | |
| 642-780, gnl|Hg17|chr4 (88635748-88635610) | |
| 642-780, gnl|loxAfr1|scaffold_45547 (11973-11800) | |
| 642-780, gnl|mm7|chr5 (103192470-103192638) | |
| 642-780, gnl|Mm7|chr5 (103192613-103192475) | |
| 642-780, gnl|monDom2|scaffold_37 (15688988-15688816) | |
| 642-780, gnl|oryCun1|scaffold_174974 (49950-50120) | |
| 642-780, gnl|panTro1|chr3 (104620559-104620727) | |
| 642-780, gnl|rheMac2|chr5 (80319021-80319193) | |
| 642-780, gnl|rn3|chr14 (6879429-6879262) | |
| 642-780, gnl|xenTro1|scaffold_380 (28004-28172) | |
| 896-1609, gnl|bosTau2|chr5 (67902442-67901718) | |
| 896-1609, gnl|Hg17|chr4 (88615699-88614945) | |
| 896-1609, gnl|Mm7|chr5 (103179899-103179148) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| lun (1.05342) | |
| liv (0.877706) | |
| kid (0.518941) | |
| duo (0.518403) | |
| lin (0.436808) | |
| ova (0.387397) | |
| sin (0.349895) | |
| spc (0.340097) | |
| fco (0.314416) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.05342) | |
| liv (0.877706) | |
| kid (0.518941) | |
| duo (0.518403) | |
| lin (0.436808) | |
| ova (0.387397) | |
| sin (0.349895) | |
| spc (0.340097) | |
| fco (0.314416) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fat (0.147427) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) |