Non-Coding RNA Search

Ss1.1-ruio29_g7.5

Sequence:


               
               GAATATAACTTCTTTGTTCTCTTTATGGTTTATGAATATTAAGTAAAACTTTATGGGTAT
ATATATTCAGATTCTATGAATCTGGTGAGGTCGGTTTGACCTGAACCATTGTATATGTTT
ATCTTGATTTTAGTCCTTTTAATTAAGTACCTTAATTCTTAGGCTGAACAGTTTTTGATT
TGTTTCAAAACTTAGGGGACATCTAAAAGTTTGTATTGTATTTGAACTCTTGAAGTTCTT
AGCAGCCTTTTTAAATTATCAAATGTCTGAAAATAAAATTTTCTAAGATTTAATAAGGGA
AGGAACTATTCAAAATTGATTTTGCATGGTAGCATCTGTGTGTAATTGAGAAAACTCTAC
AAGCATTAATAACATCTCATATCAAATACCCAATTATTAGATATGTTCCAAGTACCATGA
TATTTTTAAAGCAGTTAAAATCTAACTAATGAACTTTGGGAATAGTCACTATGCAGTTGA
ACCTCATCATCGTCCTATGAGTAGGATTCCTTTTTTTAACCCTTAAAATATTTTGTCTCT
CTAGTTTGTGGGGTTGGATGGGAGGGATCCACAGTTCTTGAATTGTTTAAAACTTAAAAG
TGTTTAATATTTAGTCTTGTATAGAAATTTTTCAGGGAGTAGGAATGATTCTGAGAAACT
AATCAAGGTAAGATTTCAGTTATAGCTAAGTTTAATGTATAAAATTATAAACCTTGAAAT
TAATGCTGTGGTGGCAGTTCTGGTTTAGTTATTTTTACTCACTTAGAAGAGCTCCAATAC
CTGTAATACATGCACTTCTGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATATAACTTCTTTGTTCTCTTTATGGTTTATGAATATTAAGTAAAACTTTATGGGTAT
ATATATTCAGATTCTATGAATCTGGTGAGGTCGGTTTGACCTGAACCATTGTATATGTTT
ATCTTGATTTTAGTCCTTTTAATTAAGTACCTTAATTCTTAGGCTGAACAGTTTTTGATT
TGTTTCAAAACTTAGGGGACATCTAAAAGTTTGTATTGTATTTGAACTCTTGAAGTTCTT
AGCAGCCTTTTTAAATTATCAAATGTCTGAAAATAAAATTTTCTAAGATTTAATAAGGGA
AGGAACTATTCAAAATTGATTTTGCATGGTAGCATCTGTGTGTAATTGAGAAAACTCTAC
AAGCATTAATAACATCTCATATCAAATACCCAATTATTAGATATGTTCCAAGTACCATGA
TATTTTTAAAGCAGTTAAAATCTAACTAATGAACTTTGGGAATAGTCACTATGCAGTTGA
ACCTCATCATCGTCCTATGAGTAGGATTCCTTTTTTTAACCCTTAAAATATTTTGTCTCT
CTAGTTTGTGGGGTTGGATGGGAGGGATCCACAGTTCTTGAATTGTTTAAAACTTAAAAG
TGTTTAATATTTAGTCTTGTATAGAAATTTTTCAGGGAGTAGGAATGATTCTGAGAAACT
AATCAAGGTAAGATTTCAGTTATAGCTAAGTTTAATGTATAAAATTATAAACCTTGAAAT
TAATGCTGTGGTGGCAGTTCTGGTTTAGTTATTTTTACTCACTTAGAAGAGCTCCAATAC
CTGTAATACATGCACTTCTGCTGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-558, gnl|bosTau2|chr21 (28816650-28817214)
               

               
               1-558, gnl|Hg17|chr14 (31697446-31697967)
               


               
               686-803, gnl|bosTau2|chr21 (28817330-28817450)
               

               
               686-803, gnl|Hg17|chr14 (31698088-31698207)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-558, gnl|bosTau2|chr21 (28816650-28817214)
               

               
               1-558, gnl|Hg17|chr14 (31697446-31697967)
               


               
               686-803, gnl|bosTau2|chr21 (28817330-28817450)
               

               
               686-803, gnl|Hg17|chr14 (31698088-31698207)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

	1-558, gnl\|bosTau2\|chr21 (28816650-28817214)
	1-558, gnl\|Hg17\|chr14 (31697446-31697967)

	686-803, gnl\|bosTau2\|chr21 (28817330-28817450)
	686-803, gnl\|Hg17\|chr14 (31698088-31698207)

	sag (0.182715)
	rec (0.17307)
	eye (0.170503)
	fat (0.147427)
	kid (0.129735)