Non-Coding RNA Search

Ss1.1-ruio30_b12.5

Sequence:


               
               CTGGGACGCCCGTGTCTGAGCGTTTTGTACTTGCTGGTGGTGGCTCGCCACTTTGTGCTA
GGGACTTGGGCTGTGATGAACCGCGATCCCGGTGGAGGTAGGGGAGCTGAACAGGAGCCA
TGGCTAGTACAGTGGTAGCAGTTGGACTGACCATTGCTGCTGCAGGATTTGCAGGCCGTT
ACGCTTTACAAGCCATGAAGCATATGGAACCTCAAGTAAAACAAGTTTTTCAAAGTCTAC
CAAAATCTGCCTTCAGTGGTGGCTATTACAGAGGTGGGTTTGAACCCAAAATGACAAAAC
GGGAAGCAGCATTGATACTAGGTGTAAGCCCTACTGCCAATAAAGGAAAAATAAGAGATG
CTCATCGACGAATTATGCTTTTAAATCACCCAGACAAGGGAGGATCTCCTTATATAGCGG
CCAAAATCAATGAAGCTAAAGATTTACTAGAAGGTCAAGCTAAAAAATGAAGTAAATGTA
TGATGAATTTTTAAGTTCTTGATTATGTATGTGAGTACTAGCTTTTTATAATAAAATGCC
TCAAAGCTACAAATTCTTTAAGTGATTTAGGACAAGCTAAATCAAAGCTTTGGCTTAAAT
TTGAGGATATTAAATTAATTATAGAATATTTGCGGGTTAATACATGATACAGATAAAACA
TACTATTCAAATACAATTTTTTGTTACTCATTTGGCAAGTAATCCAGTACCTATTTCAAG
GCAAAGTGAACAAAGAGTCCCTGCTCTCAAGGAGTCTCCAATCTGATGGGAGATTGATAA
ACTGATAAATAAAATACAGTGTGATAAATATTATGATGGAATTAGCAAAAGTTTTTAGAG
TAGGAACTCATCTAACTAGGAAGGAAGGCTGTTCAAAGAACAGAGGATTCCCCTAGCCAA
TTCAAAGTGAAATTTAGCCACAACTTTAACCTAAGAAATTGATCTAGGTATGTATTTATC
TCTGGTTTCATACATTAAAAACTGTAACAATATGATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGACGCCCGTGTCTGAGCGTTTTGTACTTGCTGGTGGTGGCTCGCCACTTTGTGCTA
GGGACTTGGGCTGTGATGAACCGCGATCCCGGTGGAGGTAGGGGAGCTGAACAGGAGCCA
TGGCTAGTACAGTGGTAGCAGTTGGACTGACCATTGCTGCTGCAGGATTTGCAGGCCGTT
ACGCTTTACAAGCCATGAAGCATATGGAACCTCAAGTAAAACAAGTTTTTCAAAGTCTAC
CAAAATCTGCCTTCAGTGGTGGCTATTACAGAGGTGGGTTTGAACCCAAAATGACAAAAC
GGGAAGCAGCATTGATACTAGGTGTAAGCCCTACTGCCAATAAAGGAAAAATAAGAGATG
CTCATCGACGAATTATGCTTTTAAATCACCCAGACAAGGGAGGATCTCCTTATATAGCGG
CCAAAATCAATGAAGCTAAAGATTTACTAGAAGGTCAAGCTAAAAAATGAAGTAAATGTA
TGATGAATTTTTAAGTTCTTGATTATGTATGTGAGTACTAGCTTTTTATAATAAAATGCC
TCAAAGCTACAAATTCTTTAAGTGATTTAGGACAAGCTAAATCAAAGCTTTGGCTTAAAT
TTGAGGATATTAAATTAATTATAGAATATTTGCGGGTTAATACATGATACAGATAAAACA
TACTATTCAAATACAATTTTTTGTTACTCATTTGGCAAGTAATCCAGTACCTATTTCAAG
GCAAAGTGAACAAAGAGTCCCTGCTCTCAAGGAGTCTCCAATCTGATGGGAGATTGATAA
ACTGATAAATAAAATACAGTGTGATAAATATTATGATGGAATTAGCAAAAGTTTTTAGAG
TAGGAACTCATCTAACTAGGAAGGAAGGCTGTTCAAAGAACAGAGGATTCCCCTAGCCAA
TTCAAAGTGAAATTTAGCCACAACTTTAACCTAAGAAATTGATCTAGGTATGTATTTATC
TCTGGTTTCATACATTAAAAACTGTAACAATATGATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55621546|ref|XP_516894.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55621546|ref|XP_516894.1|

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               399-846, gnl|bosTau2|chr1 (52726896-52726475)
               

               
               399-846, gnl|Hg17|chr3 (182185201-182184753)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               399-846, gnl|bosTau2|chr1 (52726896-52726475)
               

               
               399-846, gnl|Hg17|chr3 (182185201-182184753)

Expressed library(ies): 51 entry(ies)

More info

Expressed library(ies): 51 entry(ies)

Help | Less info


               
               hea (1.63599)
               

               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               kid (1.03788)
               

               
               mgp (0.922722)
               

               
               lyg (0.665513)
               

               
               mas (0.630915)
               

               
               bfe (0.599431)
               

               
               ssp (0.542079)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               cut (0.509771)
               

               
               ece (0.45861)
               

               
               lun (0.451467)
               

               
               ski (0.440205)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 51 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.63599)
               

               
               vin (1.33023)
               

               
               isp (1.20301)
               

               
               kid (1.03788)
               

               
               mgp (0.922722)
               

               
               lyg (0.665513)
               

               
               mas (0.630915)
               

               
               bfe (0.599431)
               

               
               ssp (0.542079)
               

               
               gul (0.532765)
               

               
               ret (0.514933)
               

               
               cut (0.509771)
               

               
               ece (0.45861)
               

               
               lun (0.451467)
               

               
               ski (0.440205)
               

               
               che (0.408942)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               sto (0.359648)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	399-846, gnl\|bosTau2\|chr1 (52726896-52726475)
	399-846, gnl\|Hg17\|chr3 (182185201-182184753)

	hea (1.63599)
	vin (1.33023)
	isp (1.20301)
	kid (1.03788)
	mgp (0.922722)
	lyg (0.665513)
	mas (0.630915)
	bfe (0.599431)
	ssp (0.542079)
	gul (0.532765)
	ret (0.514933)
	cut (0.509771)
	ece (0.45861)
	lun (0.451467)
	ski (0.440205)
	che (0.408942)
	col (0.390016)
	sug (0.381874)
	mgm (0.360685)
	sto (0.359648)
	mga (0.32041)
	fco (0.314416)
	sme (0.305437)
	cte (0.29274)
	lin (0.291206)
	cst (0.280073)
	cbe (0.239234)
	ecc (0.23007)
	spc (0.226732)
	fli (0.202881)
	sag (0.182715)
	fty (0.17584)
	mcp (0.170648)
	nje (0.16592)
	cki (0.165235)
	cje (0.165235)
	tbr (0.154178)
	fat (0.147427)
	spl (0.143184)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ova (0.129132)
	cbr (0.127975)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	jca (0.11396)
	ldo (0.0970026)